Paketti: sepp (4.3.10+dfsg-5)

Links for sepp

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External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

phylogeny with ensembles of Hidden Markov Models

The tools SEPP and TIPP implementing these methods use ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

TIPP stands for "Taxonomic Identification and Phylogenetic Profiling", and addresses the problem of taxonomic identification and abundance profiling of metagenomic data.

Muut pakettiin sepp liittyvät paketit

depends

recommends

suggests

enhances

dep: hmmer

profile hidden Markov models for protein sequence analysis
dep: libcommons-beanutils-java

Apache Commons BeanUtils - Utility for manipulating Java beans
dep: libcommons-collections3-java

Apache Commons Collections - Extended Collections API for Java
dep: libcommons-lang-java

Commons Lang - an extension of the java.lang package
dep: libcommons-logging-java

common wrapper interface for several logging APIs
dep: libgoogle-gson-java

Converts Java objects into their JSON representation
dep: libjenkins-json-java

Library for transforming Java objects between XML and JSON
dep: libjson-java

library for transforming Java objects and XML to JSON and back again
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: pplacer

phylogenetic placement and downstream analysis
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	179.6 kt	551.0 kt	[tiedostoluettelo]