Paketti: python3-dna-jellyfish (2.3.0-10)

Links for python3-dna-jellyfish

Debian-palvelut:

Imuroi lähdekoodipaketti jellyfish:

Ylläpitäjät:

External Resources:

Kotisivu [www.cbcb.umd.edu]

Samankaltaisia paketteja:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Muut pakettiin python3-dna-jellyfish liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [ei amd64, arm64, ppc64el]
dep: libgcc-s1 (>= 3.0) [ei armel, armhf, i386]

GCC:n apukirjasto

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386]
dep: libjellyfish-2.0-2 (>= 2.3.0)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 5.2) [armel, armhf]

GNU standardi C++ -kirjasto, versio 3

dep: libstdc++6 (>= 9) [ei armel, armhf]
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10)

dep: python3 (>= 3.9~)

Imuroi python3-dna-jellyfish

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	53.6 kt	173.0 kt	[tiedostoluettelo]
arm64	50.6 kt	169.0 kt	[tiedostoluettelo]
armel	52.8 kt	166.0 kt	[tiedostoluettelo]
armhf	53.4 kt	138.0 kt	[tiedostoluettelo]
i386	60.7 kt	178.0 kt	[tiedostoluettelo]
mips64el	52.1 kt	191.0 kt	[tiedostoluettelo]
ppc64el	56.4 kt	237.0 kt	[tiedostoluettelo]