Paketti: r-bioc-mutationalpatterns (3.0.1+dfsg-2)

Links for r-bioc-mutationalpatterns

Debian-palvelut:

Imuroi lähdekoodipaketti r-bioc-mutationalpatterns:

Ylläpitäjät:

External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

GNU R comprehensive genome-wide analysis of mutational processes

This BioConductor package provides an extensive toolset for the characterization and visualization of a wide range of mutational patterns in base substitution catalogs.

Muut pakettiin r-bioc-mutationalpatterns liittyvät paketit

depends

recommends

suggests

enhances

dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.12

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-base-core (>= 4.0.4-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.18.0)

generic functions for Bioconductor
dep: r-bioc-biostrings (>= 2.40.0)

GNU R string objects representing biological sequences
dep: r-bioc-bsgenome (>= 1.40.0)

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-genomeinfodb (>= 1.12.0)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.24.0)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.6.0)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-variantannotation (>= 1.18.1)

BioConductor annotation of genetic variants
dep: r-cran-cowplot (>= 0.9.2)

GNU R streamlined plot theme and plot annotations for 'ggplot2'
dep: r-cran-dplyr (>= 0.8.3)

GNU R grammar of data manipulation
dep: r-cran-ggalluvial (>= 0.12.2)

GNU R alluvial plots in 'ggplot2'
dep: r-cran-ggdendro (>= 0.1-20)

GNU R create dendrograms and tree diagrams using 'ggplot2'
dep: r-cran-ggplot2 (>= 2.1.0)

implementation of the Grammar of Graphics
dep: r-cran-magrittr (>= 1.5)

GNU R forward-pipe operator
dep: r-cran-nmf (>= 0.20.6)

GNU R framework to perform non-negative matrix factorization
dep: r-cran-pracma (>= 1.8.8)

practical numerical math functions for GNU R
dep: r-cran-purrr (>= 0.3.2)

GNU R functional programming tools
dep: r-cran-stringr (>= 1.4.0)

Make it easier to work with strings
dep: r-cran-tibble (>= 2.1.3)

GNU R Simple Data Frames
dep: r-cran-tidyr (>= 1.0.0)

GNU R package to easily tidy data

sug: r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor
sug: r-bioc-biocstyle (>= 2.0.3)

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biomart (>= 2.28.0)

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-rtracklayer (>= 1.32.2)

GNU R interface to genome browsers and their annotation tracks
sug: r-cran-gridextra (>= 2.2.1)

GNU R package with extensions for the grid package
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Imuroi r-bioc-mutationalpatterns

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	2,241.7 kt	5,060.0 kt	[tiedostoluettelo]