Paketti: fastahack (1.0.0+dfsg-7)

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Samankaltaisia paketteja:

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Muut pakettiin fastahack liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.17)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3

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