Paketti: murasaki-mpi (1.68.6-12)

Links for murasaki-mpi

Debian-palvelut:

Imuroi lähdekoodipaketti murasaki:

Ylläpitäjät:

External Resources:

Kotisivu [murasaki.dna.bio.keio.ac.jp]

Samankaltaisia paketteja:

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Muut pakettiin murasaki-mpi liittyvät paketit

depends

recommends

suggests

enhances

dep: libboost-filesystem1.74.0 (>= 1.74.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.74.0 (>= 1.74.0)

Boost.Iostreams -kirjasto
dep: libboost-regex1.74.0-icu67

näennäispaketti, jonka toteuttaa libboost-regex1.74.0
dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0) [ei armel, armhf, i386, mipsel]

GCC:n apukirjasto

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libopenmpi3 (>= 4.1.0)

high performance message passing library -- shared library
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3
dep: murasaki-common

homology detection tool across multiple large genomes (common files)

Imuroi murasaki-mpi

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	626.2 kt	4,074.0 kt	[tiedostoluettelo]
arm64	550.4 kt	3,706.0 kt	[tiedostoluettelo]
armel	407.7 kt	2,488.0 kt	[tiedostoluettelo]
armhf	419.1 kt	1,772.0 kt	[tiedostoluettelo]
i386	640.9 kt	3,828.0 kt	[tiedostoluettelo]
mips64el	593.2 kt	5,060.0 kt	[tiedostoluettelo]
mipsel	583.0 kt	4,406.0 kt	[tiedostoluettelo]
ppc64el	627.7 kt	5,202.0 kt	[tiedostoluettelo]
s390x	557.9 kt	4,274.0 kt	[tiedostoluettelo]