Paketti: libseqlib2 (1.2.0+dfsg-4)
Links for libseqlib2
Debian-palvelut:
Imuroi lähdekoodipaketti libseqlib:
- [libseqlib_1.2.0+dfsg-4.dsc]
- [libseqlib_1.2.0+dfsg.orig.tar.xz]
- [libseqlib_1.2.0+dfsg-4.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
Muut pakettiin libseqlib2 liittyvät paketit
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- dep: libc6 (>= 2.14) [amd64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [ei amd64, arm64, ppc64el]
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- dep: libfml0 (>= 0.1+git20190320.b499514)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s1 (>= 3.0) [ei armel, armhf, mipsel]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [mipsel]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjsoncpp24 (>= 1.9.4)
- library for reading and writing JSON for C++
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU standardi C++ -kirjasto, versio 3
- dep: libstdc++6 (>= 9) [ei armel, armhf]
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- dep: zlib1g (>= 1:1.1.4)
- pakkauskirjaston ajonaikaistiedostot
Imuroi libseqlib2
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 158.6 kt | 565.0 kt | [tiedostoluettelo] |
| arm64 | 144.6 kt | 528.0 kt | [tiedostoluettelo] |
| armel | 135.5 kt | 484.0 kt | [tiedostoluettelo] |
| armhf | 139.2 kt | 391.0 kt | [tiedostoluettelo] |
| i386 | 172.1 kt | 566.0 kt | [tiedostoluettelo] |
| mips64el | 145.6 kt | 613.0 kt | [tiedostoluettelo] |
| mipsel | 146.5 kt | 590.0 kt | [tiedostoluettelo] |
| ppc64el | 167.1 kt | 661.0 kt | [tiedostoluettelo] |
| s390x | 142.8 kt | 572.0 kt | [tiedostoluettelo] |