[ Source: libedlib ]
Paketti: edlib-aligner (1.2.6-1)
Links for edlib-aligner
Debian-palvelut:
Imuroi lähdekoodipaketti libedlib:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
edlib sequence alignment tool using edit distance
Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.
Features of libedlib
* Calculates edit distance (Levehnstein distance). * It can find optimal alignment path (instructions how to transform first sequence into the second sequence). * It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path. * Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios. * You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides. * It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory. * Super fast thanks to Myers's bit-vector algorithm.
Muut pakettiin edlib-aligner liittyvät paketit
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- dep: libc6 (>= 2.14) [amd64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [ei amd64, arm64, ppc64el]
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- dep: libedlib0 (= 1.2.6-1)
- library for sequence alignment using edit distance
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- dep: libgcc-s1 (>= 3.0) [ei armel, armhf]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
Imuroi edlib-aligner
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
---|---|---|---|
amd64 | 22.3 kt | 65.0 kt | [tiedostoluettelo] |
arm64 | 21.3 kt | 57.0 kt | [tiedostoluettelo] |
armel | 19.0 kt | 52.0 kt | [tiedostoluettelo] |
armhf | 19.0 kt | 48.0 kt | [tiedostoluettelo] |
i386 | 22.3 kt | 64.0 kt | [tiedostoluettelo] |
mips64el | 21.2 kt | 62.0 kt | [tiedostoluettelo] |
mipsel | 21.7 kt | 61.0 kt | [tiedostoluettelo] |
ppc64el | 25.5 kt | 85.0 kt | [tiedostoluettelo] |
s390x | 20.9 kt | 61.0 kt | [tiedostoluettelo] |