Paketti: qiime (2020.11.1-1)

Links for qiime

Debian-palvelut:

Imuroi lähdekoodipaketti qiime:

Ylläpitäjät:

External Resources:

Kotisivu [qiime2.org]

Samankaltaisia paketteja:

Quantitative Insights Into Microbial Ecology

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Tagit: Role: Program

Muut pakettiin qiime liittyvät paketit

depends

recommends

suggests

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-bibtexparser

Python 3 library to parse bibtex files
dep: python3-dateutil

powerful extensions to the standard Python 3 datetime module
dep: python3-decorator

simplify usage of Python decorators by programmers
dep: python3-networkx

tool to create, manipulate and study complex networks (Python3)
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pyparsing

alternative to creating and executing simple grammars - Python 3.x
dep: python3-tzlocal

tzinfo object for the local timezone
dep: python3-yaml

YAML parser and emitter for Python3

rec: q2-cutadapt

QIIME 2 plugin to work with adapters in sequence data
rec: q2-demux

QIIME 2 plugin for demultiplexing of sequence reads
rec: q2-feature-classifier

QIIME 2 plugin supporting taxonomic classification
rec: q2-feature-table

QIIME 2 plugin supporting operations on feature tables
rec: q2-metadata

QIIME 2 plugin for working with and visualizing Metadata
rec: q2-quality-filter

QIIME2 plugin for PHRED-based filtering and trimming
rec: q2-types

QIIME 2 plugin defining types for microbiome analysis
rec: q2cli

Click-based command line interface for QIIME 2
rec: q2templates

Design template package for QIIME 2 Plugins

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	147.0 kt	1,057.0 kt	[tiedostoluettelo]