Paketti: r-bioc-rsamtools (2.14.0-1)

Links for r-bioc-rsamtools

Debian-palvelut:

Imuroi lähdekoodipaketti r-bioc-rsamtools:

Ylläpitäjät:

External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Muut pakettiin r-bioc-rsamtools liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libcurl4 (>= 7.18.0)

easy-to-use client-side URL transfer library (OpenSSL flavour)
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libstdc++6 (>= 11)

GNU standardi C++ -kirjasto, versio 3
dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.16

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.25.1)

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.47.6)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.1.3)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.31.8)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.13.12)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rhtslib (>= 1.99.3)

HTSlib high-throughput sequencing library as GNU R package
dep: r-bioc-s4vectors (>= 0.17.25)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-xvector (>= 0.19.7)

BioConductor representation and manpulation of external sequences
dep: r-bioc-zlibbioc

(Virtual) zlibbioc Bioconductor package
dep: r-cran-bitops

GNU R package implementing bitwise operations

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-genomicalignments

BioConductor representation and manipulation of short genomic alignments
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-shortread (>= 1.19.10)

GNU R classes and methods for high-throughput short-read sequencing data
sug: r-cran-runit

GNU R package providing unit testing framework

Imuroi r-bioc-rsamtools

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