Paketti: alien-hunter (1.7-10)

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Kotisivu [www.sanger.ac.uk]

Samankaltaisia paketteja:

Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.

Tagit: Field: Biology, Structural Biology, Implemented in: implemented-in::java, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Analysing

Muut pakettiin alien-hunter liittyvät paketit

depends

recommends

suggests

enhances

dep: libbiojava-java (>= 1:1.9.5+dfsg)

Java API to biological data and applications (default version)
dep: libbytecode-java

Java bytecode manipulation library
dep: libcommons-cli-java

Command line arguments and options parsing library
dep: libcommons-collections3-java

Apache Commons Collections - Extended Collections API for Java
dep: libcommons-dbcp-java

Database Connection Pooling Services
dep: libcommons-pool-java

pooling implementation for Java objects

sug: bioperl

Perl tools for computational molecular biology

Imuroi alien-hunter

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	27.8 kt	113.0 kt	[tiedostoluettelo]