Paketti: maffilter (1.3.1+dfsg-4)

Links for maffilter

Debian-palvelut:

Imuroi lähdekoodipaketti maffilter:

Ylläpitäjät:

External Resources:

Kotisivu [jydu.github.io]

Samankaltaisia paketteja:

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Muut pakettiin maffilter liittyvät paketit

depends

recommends

suggests

enhances

dep: libboost-iostreams1.74.0 (>= 1.74.0)

Boost.Iostreams -kirjasto
dep: libbpp-core4 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl-omics3 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq-omics3 (>= 2.4.1)

Bio++ Sequence library: genomics components
dep: libbpp-seq12 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.34)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libstdc++6 (>= 11)

GNU standardi C++ -kirjasto, versio 3

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

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