Package: progressivemauve (1.2.0+4713+dfsg-5 and others)
Links for progressivemauve
Debian Resources:
Download Source Package progressivemauve:
- [progressivemauve_1.2.0+4713+dfsg-5.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-5.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [darlinglab.org]
Similar packages:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
Other Packages Related to progressivemauve
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
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- dep: libboost-program-options1.83.0 (>= 1.83.0)
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- dep: libc6 (>= 2.34)
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also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64, mips64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libgenome0 (>= 1.3.11+svn20110227.4616)
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- dep: libmems1t64 (>= 1.6.0+4725)
- library to support DNA string matching and comparative genomics
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- enh: mauve-aligner
- multiple genome alignment
Download progressivemauve
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 1.2.0+4713+dfsg-5+b3 | 850.6 kB | 5,393.0 kB | [list of files] |
| arm64 | 1.2.0+4713+dfsg-5+b3 | 791.1 kB | 5,774.0 kB | [list of files] |
| armel | 1.2.0+4713+dfsg-5+b3 | 671.7 kB | 3,966.0 kB | [list of files] |
| armhf | 1.2.0+4713+dfsg-5+b3 | 668.8 kB | 3,070.0 kB | [list of files] |
| i386 | 1.2.0+4713+dfsg-5+b3 | 842.1 kB | 5,254.0 kB | [list of files] |
| mips64el | 1.2.0+4713+dfsg-5+b3 | 823.7 kB | 6,838.0 kB | [list of files] |
| ppc64el | 1.2.0+4713+dfsg-5+b3 | 877.5 kB | 6,863.0 kB | [list of files] |
| s390x | 1.2.0+4713+dfsg-5+b3 | 729.4 kB | 5,366.0 kB | [list of files] |