Package: r-bioc-scuttle (1.14.0+dfsg-1 and others)

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Homepage [bioconductor.org]

Similar packages:

BioConductor single-cell RNA-Seq analysis utilities

Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.

Other Packages Related to r-bioc-scuttle

depends

recommends

suggests

enhances

dep: libblas3 [sparc64]

Basic Linear Algebra Reference implementations, shared library

or libblas.so.3

virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libc6 (>= 2.11) [mips64el, ppc64, s390x, sparc64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.2) [hppa]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.11) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [not alpha, hppa, ia64, riscv64, sh4, sparc64]

GCC support library

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

dep: libgcc-s1 (>= 4.2) [sh4]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC support library
dep: libgfortran5 (>= 8) [sparc64]

Runtime library for GNU Fortran applications
dep: liblapack3

Library of linear algebra routines 3 - shared version

or liblapack.so.3

virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libstdc++6 (>= 11) [x32]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

dep: libstdc++6 (>= 14) [not hppa, ia64, sh4, x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-4.0

virtual package provided by r-base-core
dep: r-api-bioc-3.16 [x32]

Package not available
dep: r-api-bioc-3.18 [hppa, ia64, sh4]

Package not available
dep: r-api-bioc-3.19 [not hppa, ia64, sh4, x32]

virtual package provided by r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-2) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat [hppa, ia64, sh4, x32]

I/O for several formats storing matrix data

dep: r-bioc-beachmat (>= 2.20.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocgenerics [hppa, ia64, sh4, x32]

generic functions for Bioconductor

dep: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

BioConductor facilities for parallel evaluation

dep: r-bioc-biocparallel (>= 1.38.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]

BioConductor delayed operations on array-like objects

dep: r-bioc-delayedarray (>= 0.30.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]

Functions on Rows and Columns of 'DelayedMatrix' Objects

dep: r-bioc-delayedmatrixstats (>= 1.26.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

BioConductor representation and manipulation of genomic intervals

dep: r-bioc-genomicranges (>= 1.56.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]

BioConductor S4 implementation of vectors and lists

dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, sh4, x32]
dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]

S4 Classes for Single Cell Data

dep: r-bioc-singlecellexperiment (>= 1.26.0) [not hppa, ia64, sh4, x32]
dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]

BioConductor assay container

dep: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, sh4, x32]
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-rcpp

GNU R package for Seamless R and C++ Integration

sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

standard styles for vignettes and other Bioconductor documents

sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, sh4, x32]
sug: r-bioc-scran [hppa, ia64, sh4, x32]

BioConductor methods for single-cell RNA-Seq data analysis

sug: r-bioc-scran (>= 1.32.0) [not hppa, ia64, sh4, x32]
sug: r-bioc-scrnaseq [hppa, ia64, sh4, x32]

Collection of Public Single-Cell RNA-Seq Datasets

sug: r-bioc-scrnaseq (>= 2.18.0) [not hppa, ia64, sh4, x32]
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Download r-bioc-scuttle

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.14.0+dfsg-1	424.3 kB	868.0 kB	[list of files]
amd64	1.14.0+dfsg-1	434.3 kB	803.0 kB	[list of files]
arm64	1.14.0+dfsg-1	419.7 kB	804.0 kB	[list of files]
hppa (unofficial port)	1.12.0+dfsg-1	415.5 kB	830.0 kB	[list of files]
ia64 (unofficial port)	1.12.0+dfsg-1	427.9 kB	1,043.0 kB	[list of files]
mips64el	1.14.0+dfsg-1	417.6 kB	911.0 kB	[list of files]
ppc64 (unofficial port)	1.14.0+dfsg-1	432.1 kB	935.0 kB	[list of files]
ppc64el	1.14.0+dfsg-1	429.7 kB	867.0 kB	[list of files]
riscv64	1.14.0+dfsg-1	430.6 kB	739.0 kB	[list of files]
s390x	1.14.0+dfsg-1	434.0 kB	827.0 kB	[list of files]
sh4 (unofficial port)	1.12.0+dfsg-1	428.1 kB	791.0 kB	[list of files]
sparc64 (unofficial port)	1.14.0+dfsg-1	412.3 kB	1,514.0 kB	[list of files]
x32 (unofficial port)	1.8.4+dfsg-1	409.7 kB	734.0 kB	[list of files]