Package: r-bioc-gsva (1.52.3+ds-1 and others)
Links for r-bioc-gsva
Debian Resources:
Download Source Package r-bioc-gsva:
- [r-bioc-gsva_1.52.3+ds-1.dsc]
- [r-bioc-gsva_1.52.3+ds.orig.tar.xz]
- [r-bioc-gsva_1.52.3+ds-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
Gene Set Variation Analysis for microarray and RNA-seq data
Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene- set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross- tissue pathway analysis, in a pathway-centric manner.
Other Packages Related to r-bioc-gsva
|
|
|
|
-
- dep: libc6 (>= 2.16) [x32]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.2) [hppa]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, mips64el, ppc64, s390x, sparc64]
-
- dep: libc6.1 (>= 2.3.4) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.16 [x32]
- Package not available
-
- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- Package not available
-
- dep: r-api-bioc-3.19 [not hppa, ia64, sh4, x32]
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-biobase [hppa, ia64, sh4, x32]
- base functions for Bioconductor
- dep: r-bioc-biobase (>= 2.64.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]
- BioConductor facilities for parallel evaluation
- dep: r-bioc-biocparallel (>= 1.38.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-biocsingular [hppa, ia64, sh4, x32]
- Singular Value Decomposition for Bioconductor Packages
- dep: r-bioc-biocsingular (>= 1.20.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]
- BioConductor delayed operations on array-like objects
- dep: r-bioc-delayedarray (>= 0.30.1) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]
- Functions on Rows and Columns of 'DelayedMatrix' Objects
- dep: r-bioc-delayedmatrixstats (>= 1.26.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-gseabase [hppa, ia64, sh4, x32]
- Gene set enrichment data structures and methods
- dep: r-bioc-gseabase (>= 1.66.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-hdf5array [hppa, ia64, sh4, x32]
- HDF5 backend for DelayedArray objects
- dep: r-bioc-hdf5array (>= 1.32.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-iranges [hppa, ia64, sh4, x32]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.38.1) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]
- S4 Classes for Single Cell Data
- dep: r-bioc-singlecellexperiment (>= 1.26.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-sparsematrixstats [hppa, ia64, sh4, x32]
- BioConductor summary statistics for rows and columns of sparse matrices
- dep: r-bioc-sparsematrixstats (>= 1.16.0) [not hppa, ia64, sh4, x32]
-
- dep: r-bioc-spatialexperiment (>= 1.14.0) [not hppa, ia64, sh4, x32]
- S4 Class for Spatially Resolved -omics Data
-
- dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, sh4, x32]
-
- dep: r-cran-matrix (>= 1.5-0)
- GNU R package of classes for dense and sparse matrices
-
- rec: r-cran-fastmatch
- GNU R package for fast match replacement for repeated look-ups
-
- rec: r-cran-runit
- GNU R package providing unit testing framework
-
- sug: r-bioc-biocgenerics [hppa, ia64, sh4, x32]
- generic functions for Bioconductor
- sug: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, sh4, x32]
-
- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, sh4, x32]
-
- sug: r-bioc-edger [hppa, ia64, sh4, x32]
- Empirical analysis of digital gene expression data in R
- sug: r-bioc-edger (>= 4.2.0) [not hppa, ia64, sh4, x32]
-
- sug: r-bioc-genefilter [hppa, ia64, sh4, x32]
- methods for filtering genes from microarray experiments
- sug: r-bioc-genefilter (>= 1.86.0) [not hppa, ia64, sh4, x32]
-
- sug: r-bioc-gsvadata (>= 1.40.0) [not hppa, ia64, sh4, x32]
- Data employed in the vignette of the GSVA package
-
- sug: r-bioc-limma [hppa, ia64, sh4, x32]
- linear models for microarray data
- sug: r-bioc-limma (>= 3.60.3) [not hppa, ia64, sh4, x32]
-
- sug: r-bioc-org.hs.eg.db [hppa, ia64, sh4, x32]
- genome-wide annotation for Human
- sug: r-bioc-org.hs.eg.db (>= 3.19.1-1) [not hppa, ia64, sh4, x32]
-
- sug: r-cran-data.table
- GNU R extension of Data.frame
-
- sug: r-cran-future
- R package: A Future API for R
-
- sug: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-plotly
- create interactive web graphics via 'plotly.js' in GNU R
-
- sug: r-cran-promises
- GNU R abstractions for promise-based asynchronous programming
-
- sug: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-runit [not hppa, ia64, sh4, x32]
- GNU R package providing unit testing framework
-
- sug: r-cran-shiny
- GNU R web application framework
-
- sug: r-cran-shinydashboard
- GNU R create dashboards with 'Shiny'
-
- sug: r-cran-shinyjs
- Easily Improve the User Experience of Your Shiny Apps in Seconds
Download r-bioc-gsva
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 1.52.3+ds-1 | 1,081.0 kB | 1,366.0 kB | [list of files] |
amd64 | 1.52.3+ds-1 | 1,080.6 kB | 1,314.0 kB | [list of files] |
arm64 | 1.52.3+ds-1 | 1,086.2 kB | 1,366.0 kB | [list of files] |
hppa (unofficial port) | 1.50.0+ds-1 | 1,071.2 kB | 1,291.0 kB | [list of files] |
ia64 (unofficial port) | 1.50.0+ds-1 | 1,072.1 kB | 1,298.0 kB | [list of files] |
mips64el | 1.52.3+ds-1 | 1,088.2 kB | 1,366.0 kB | [list of files] |
ppc64 (unofficial port) | 1.52.3+ds-1 | 1,081.7 kB | 1,366.0 kB | [list of files] |
ppc64el | 1.52.3+ds-1 | 1,081.5 kB | 1,366.0 kB | [list of files] |
riscv64 | 1.52.3+ds-1 | 1,088.0 kB | 1,322.0 kB | [list of files] |
s390x | 1.52.3+ds-1 | 1,080.9 kB | 1,314.0 kB | [list of files] |
sh4 (unofficial port) | 1.50.0+ds-1 | 1,070.9 kB | 1,347.0 kB | [list of files] |
sparc64 (unofficial port) | 1.52.3+ds-1 | 1,080.6 kB | 2,327.0 kB | [list of files] |
x32 (unofficial port) | 1.46.0+ds-1 | 781.0 kB | 911.0 kB | [list of files] |