Package: mafft (7.505-1 and others)

Links for mafft

Debian Resources:

Download Source Package mafft:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [mafft.cbrc.jp]

Similar packages:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

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dep: libc6 (>= 2.33) [sh4]

dep: libc6 (>= 2.34) [arm64, riscv64]
dep: libc6.1 (>= 2.29) [alpha]

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Multiple Sequence Alignment

Download mafft

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	7.505-1	1,032.8 kB	15,184.0 kB	[list of files]
amd64	7.505-1	1,052.5 kB	11,920.0 kB	[list of files]
arm64	7.505-1+b1	937.9 kB	12,408.0 kB	[list of files]
armel	7.505-1	916.0 kB	12,403.0 kB	[list of files]
armhf	7.505-1	765.3 kB	9,139.0 kB	[list of files]
hppa (unofficial port)	7.505-1	890.5 kB	11,092.0 kB	[list of files]
i386	7.505-1	983.3 kB	13,119.0 kB	[list of files]
ia64 (unofficial port)	7.505-1	1,103.2 kB	24,053.0 kB	[list of files]
m68k (unofficial port)	7.505-1	968.3 kB	10,923.0 kB	[list of files]
mips64el	7.505-1	873.9 kB	14,427.0 kB	[list of files]
ppc64 (unofficial port)	7.505-1	1,036.3 kB	16,784.0 kB	[list of files]
ppc64el	7.505-1	1,019.2 kB	16,336.0 kB	[list of files]
riscv64	7.505-1+b1	1,085.5 kB	9,760.0 kB	[list of files]
s390x	7.505-1	891.0 kB	13,010.0 kB	[list of files]
sh4 (unofficial port)	7.505-1	879.0 kB	11,959.0 kB	[list of files]
sparc64 (unofficial port)	7.505-1	1,056.5 kB	33,604.0 kB	[list of files]
x32 (unofficial port)	7.505-1	1,041.3 kB	11,379.0 kB	[list of files]