[ Source: cyvcf2 ]
Package: python3-cyvcf2 (0.30.4-4)
Links for python3-cyvcf2
Debian Resources:
Download Source Package cyvcf2:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Liubov Chuprikova (QA Page)
- Nilesh Patra (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
VCF parser based on htslib (Python 3)
This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.
cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.
This package installs the library for Python 3.
Other Packages Related to python3-cyvcf2
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.7) [not amd64, arm64, ppc64el]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-coloredlogs
- colored terminal output for Python 3's logging module
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- dep: python3-numpy (>= 1:1.16.0~rc1)
- Fast array facility to the Python 3 language
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- dep: python3-numpy-abi9
- virtual package provided by python3-numpy
Download python3-cyvcf2
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 787.7 kB | 4,755.0 kB | [list of files] |
| arm64 | 758.6 kB | 4,694.0 kB | [list of files] |
| armel | 758.7 kB | 4,662.0 kB | [list of files] |
| armhf | 759.8 kB | 4,482.0 kB | [list of files] |
| i386 | 787.5 kB | 4,779.0 kB | [list of files] |
| mips64el | 742.9 kB | 4,773.0 kB | [list of files] |
| mipsel | 743.9 kB | 4,724.0 kB | [list of files] |
| ppc64el | 787.2 kB | 4,870.0 kB | [list of files] |
| s390x | 751.4 kB | 4,749.0 kB | [list of files] |