Package: libbio-db-hts-perl (3.01-3 and others)

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Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

Other Packages Related to libbio-db-hts-perl

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dep: libbio-perl-perl

BioPerl core perl modules
dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: perl (>= 5.32.0-4)

Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.32.0

virtual package provided by perl-base
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

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Architecture	Version	Package Size	Installed Size	Files
amd64	3.01-3+b1	156.1 kB	452.0 kB	[list of files]
arm64	3.01-3+b1	152.2 kB	451.0 kB	[list of files]
armel	3.01-3+b1	150.6 kB	435.0 kB	[list of files]
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ppc64el	3.01-3+b1	154.3 kB	552.0 kB	[list of files]