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[ Source: libssw  ]

Package: ssw-align (1.1-13)

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Smith-Waterman aligner based on libssw

This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.

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Download ssw-align

Download for all available architectures
Architecture Package Size Installed Size Files
s390x 25.3 kB75.0 kB [list of files]