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[ Source: tiddit  ]

Package: tiddit (2.12.0+dfsg-3 and others)

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structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

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Download tiddit

Download for all available architectures
Architecture Version Package Size Installed Size Files
s390x 2.12.0+dfsg-3+b1 200.7 kB951.0 kB [list of files]