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[ Source: parsnp  ]

Package: parsnp (1.5.4+dfsg-1)

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rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

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Download for all available architectures
Architecture Package Size Installed Size Files
s390x 169.9 kB1,885.0 kB [list of files]