all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: concavity  ]

Package: concavity (0.1+dfsg.1-5)

Links for concavity

Screenshot

Debian Resources:

Download Source Package concavity:

Maintainers:

External Resources:

Similar packages:

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Other Packages Related to concavity

  • depends
  • recommends
  • suggests
  • enhances

Download concavity

Download for all available architectures
Architecture Package Size Installed Size Files
mipsel 259.2 kB1,112.0 kB [list of files]