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[ Source: libgkarrays  ]

Package: libgkarrays1 (2.1.0+dfsg-4)

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library to query large collection of NGS sequences

Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche).

Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?).

Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times.

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amd64 55.4 kB171.0 kB [list of files]
arm64 51.3 kB154.0 kB [list of files]
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