Package: r-bioc-scran (1.18.5+dfsg-1)

Links for r-bioc-scran

Debian Resources:

Download Source Package r-bioc-scran:

Maintainers:

External Resources:

Homepage [bioconductor.org]

Similar packages:

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Other Packages Related to r-bioc-scran

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0) [not armel, armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: liblapack3

Library of linear algebra routines 3 - shared version

or liblapack.so.3

virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: r-api-4.0

virtual package provided by r-base-core
dep: r-api-bioc-3.12

virtual package provided by r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat

I/O for several formats storing matrix data
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocneighbors

Nearest Neighbor Detection for Bioconductor Packages
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages
dep: r-bioc-bluster

Clustering Algorithms for Bioconductor
dep: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
dep: r-bioc-delayedmatrixstats

Functions on Rows and Columns of 'DelayedMatrix' Objects
dep: r-bioc-edger

Empirical analysis of digital gene expression data in R
dep: r-bioc-limma

linear models for microarray data
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-scuttle

BioConductor single-cell RNA-Seq analysis utilities
dep: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-bh

(Virtual) GNU R package to provide BH
dep: r-cran-dqrng

GNU R fast pseudo random number generators
dep: r-cran-igraph

GNU R network analysis and visualization
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-rcpp

GNU R package for Seamless R and C++ Integration
dep: r-cran-statmod

GNU R package providing algorithms and functions for statistical modeling

rec: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
rec: r-bioc-monocle

clustering, differential expression, and trajectory analysis for RNA-Seq
rec: r-cran-dynamictreecut

Methods for Detection of Clusters in Hierarchical Clustering
rec: r-cran-testthat

GNU R testsuite

sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-hdf5array

HDF5 backend for DelayedArray objects
sug: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-pheatmap

GNU R package to create pretty heatmaps

Download r-bioc-scran

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	1,115.4 kB	1,599.0 kB	[list of files]
arm64	1,098.6 kB	1,571.0 kB	[list of files]
armel	1,096.6 kB	1,537.0 kB	[list of files]
armhf	1,096.0 kB	1,465.0 kB	[list of files]
i386	1,118.8 kB	1,609.0 kB	[list of files]
mips64el	1,096.0 kB	1,710.0 kB	[list of files]
mipsel	1,097.8 kB	1,651.0 kB	[list of files]
ppc64el	1,114.8 kB	1,687.0 kB	[list of files]
s390x	1,105.6 kB	1,619.0 kB	[list of files]