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/usr/bin/metaspades
/usr/bin/metaspades.py
/usr/bin/plasmidspades
/usr/bin/plasmidspades.py
/usr/bin/rnaspades
/usr/bin/rnaspades.py
/usr/bin/spades
/usr/bin/spades.py
/usr/bin/truspades
/usr/bin/truspades.py
/usr/lib/spades/bin/VERSION
/usr/lib/spades/bin/metaspades.py
/usr/lib/spades/bin/plasmidspades.py
/usr/lib/spades/bin/rnaspades.py
/usr/lib/spades/bin/spades-bwa
/usr/lib/spades/bin/spades-core
/usr/lib/spades/bin/spades-corrector-core
/usr/lib/spades/bin/spades-gbuilder
/usr/lib/spades/bin/spades-gmapper
/usr/lib/spades/bin/spades-hammer
/usr/lib/spades/bin/spades-ionhammer
/usr/lib/spades/bin/spades-kmercount
/usr/lib/spades/bin/spades-truseq-scfcorrection
/usr/lib/spades/bin/spades.py
/usr/lib/spades/bin/spades_init.py
/usr/lib/spades/bin/truspades.py
/usr/share/doc-base/spades
/usr/share/doc/spades/README.md.gz
/usr/share/doc/spades/changelog.Debian.amd64.gz
/usr/share/doc/spades/changelog.Debian.gz
/usr/share/doc/spades/changelog.gz
/usr/share/doc/spades/copyright
/usr/share/doc/spades/manual.html
/usr/share/doc/spades/rnaspades_manual.html
/usr/share/doc/spades/truspades_manual.html
/usr/share/man/man1/metaspades.1.gz
/usr/share/man/man1/metaspades.py.1.gz
/usr/share/man/man1/plasmidspades.1.gz
/usr/share/man/man1/plasmidspades.py.1.gz
/usr/share/man/man1/rnaspades.1.gz
/usr/share/man/man1/rnaspades.py.1.gz
/usr/share/man/man1/spades.1.gz
/usr/share/man/man1/spades.py.1.gz
/usr/share/man/man1/truspades.1.gz
/usr/share/man/man1/truspades.py.1.gz
/usr/share/python3/runtime.d/spades.rtupdate
/usr/share/spades/VERSION
/usr/share/spades/configs/corrector/corrector.info
/usr/share/spades/configs/debruijn/careful_mda_mode.info
/usr/share/spades/configs/debruijn/careful_mode.info
/usr/share/spades/configs/debruijn/config.info
/usr/share/spades/configs/debruijn/construction.info
/usr/share/spades/configs/debruijn/detail_info_printer.info
/usr/share/spades/configs/debruijn/distance_estimation.info
/usr/share/spades/configs/debruijn/large_genome_mode.info
/usr/share/spades/configs/debruijn/mda_mode.info
/usr/share/spades/configs/debruijn/meta_mode.info
/usr/share/spades/configs/debruijn/moleculo_mode.info
/usr/share/spades/configs/debruijn/pe_params.info
/usr/share/spades/configs/debruijn/plasmid_mode.info
/usr/share/spades/configs/debruijn/rna_mode.info
/usr/share/spades/configs/debruijn/simplification.info
/usr/share/spades/configs/debruijn/toy.info
/usr/share/spades/configs/debruijn/tsa.info
/usr/share/spades/configs/hammer/config.info
/usr/share/spades/configs/ionhammer/ionhammer.cfg
/usr/share/spades/spades_pipeline/common/SeqIO.py
/usr/share/spades/spades_pipeline/common/__init__.py
/usr/share/spades/spades_pipeline/common/alignment.py
/usr/share/spades/spades_pipeline/common/parallel_launcher.py
/usr/share/spades/spades_pipeline/common/sam_parser.py
/usr/share/spades/spades_pipeline/corrector_logic.py
/usr/share/spades/spades_pipeline/hammer_logic.py
/usr/share/spades/spades_pipeline/lucigen_nxmate.py
/usr/share/spades/spades_pipeline/options_storage.py
/usr/share/spades/spades_pipeline/process_cfg.py
/usr/share/spades/spades_pipeline/spades_logic.py
/usr/share/spades/spades_pipeline/support.py
/usr/share/spades/spades_pipeline/truspades/barcode_extraction.py
/usr/share/spades/spades_pipeline/truspades/break_by_coverage.py
/usr/share/spades/spades_pipeline/truspades/generate_quality.py
/usr/share/spades/spades_pipeline/truspades/id_generation.py
/usr/share/spades/spades_pipeline/truspades/launch_options.py
/usr/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py
/usr/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py
/usr/share/spades/spades_pipeline/truspades/reference_construction.py
/usr/share/spades/spades_pipeline/truspades/string_dist_utils.py
/usr/share/spades/test_dataset/ecoli_1K_1.fq.gz
/usr/share/spades/test_dataset/ecoli_1K_2.fq.gz
/usr/share/spades/test_dataset/genes_1K.gff
/usr/share/spades/test_dataset/genes_1K.txt
/usr/share/spades/test_dataset/operons_1K.gff
/usr/share/spades/test_dataset/operons_1K.txt
/usr/share/spades/test_dataset/reference_1K.fa.gz
/usr/share/spades/test_dataset_plasmid/pl1.fq.gz
/usr/share/spades/test_dataset_plasmid/pl2.fq.gz
/usr/share/spades/test_dataset_truspades/A_R1.fastq.gz
/usr/share/spades/test_dataset_truspades/A_R2.fastq.gz
/usr/share/spades/test_dataset_truspades/B_R1.fastq.gz
/usr/share/spades/test_dataset_truspades/B_R2.fastq.gz