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/etc/plasmidid/OR.conf
/etc/plasmidid/circos_individual_1_3_0.conf
/etc/plasmidid/circos_individual_1_3_3.conf
/etc/plasmidid/circos_summary_1_3_0.conf
/etc/plasmidid/circos_summary_1_3_3.conf
/etc/plasmidid/simple.conf
/usr/bin/plasmidID
/usr/share/doc/plasmidid/changelog.Debian.gz
/usr/share/doc/plasmidid/changelog.gz
/usr/share/doc/plasmidid/copyright
/usr/share/man/man1/plasmidID.1.gz
/usr/share/plasmidid/bin/adapt_filter_coverage.sh
/usr/share/plasmidid/bin/blast_align.sh
/usr/share/plasmidid/bin/blast_to_bed.sh
/usr/share/plasmidid/bin/blast_to_complete.sh
/usr/share/plasmidid/bin/blast_to_link.sh
/usr/share/plasmidid/bin/bowtie_mapper.sh
/usr/share/plasmidid/bin/build_karyotype.sh
/usr/share/plasmidid/bin/calculate_seqlen.sh
/usr/share/plasmidid/bin/cdhit_cluster.sh
/usr/share/plasmidid/bin/check_dependencies.sh
/usr/share/plasmidid/bin/check_mandatory_files.sh
/usr/share/plasmidid/bin/coordinate_adapter.sh
/usr/share/plasmidid/bin/download_plasmid_database.py
/usr/share/plasmidid/bin/draw_circos_images.sh
/usr/share/plasmidid/bin/filter_fasta.sh
/usr/share/plasmidid/bin/get_coverage.sh
/usr/share/plasmidid/bin/gff_to_bed.sh
/usr/share/plasmidid/bin/mash_screener.sh
/usr/share/plasmidid/bin/mashclust.py
/usr/share/plasmidid/bin/ncbi_database_fetcher.sh
/usr/share/plasmidid/bin/process_cluster_output.sh
/usr/share/plasmidid/bin/prokka_annotation.sh
/usr/share/plasmidid/bin/quality_trim.sh
/usr/share/plasmidid/bin/rename_from_fasta.sh
/usr/share/plasmidid/bin/sam_to_bam.sh
/usr/share/plasmidid/bin/spades_assembly.sh
/usr/share/plasmidid/bin/summary_report_pid.py
/usr/share/plasmidid/bin/summary_table.sh
/usr/share/plasmidid/plasmidID
/usr/share/python3/runtime.d/plasmidid.rtupdate