all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: toppred  ]

Package: toppred (1.10-10)

Links for toppred

Screenshot

Debian Resources:

Download Source Package toppred:

Maintainers:

External Resources:

Similar packages:

transmembrane topology prediction

Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm.

Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro.

Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png

The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable.

This program is a new implementation of the original toppred program, based on G. von Heijne algorithm

Other Packages Related to toppred

  • depends
  • recommends
  • suggests
  • enhances

Download toppred

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 43.4 kB213.0 kB [list of files]
arm64 41.6 kB228.0 kB [list of files]
armel 42.8 kB228.0 kB [list of files]
armhf 40.4 kB228.0 kB [list of files]
i386 44.2 kB212.0 kB [list of files]
mips64el 42.9 kB232.0 kB [list of files]
mipsel 42.7 kB230.0 kB [list of files]
ppc64el 45.7 kB229.0 kB [list of files]
s390x 41.4 kB208.0 kB [list of files]