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[ Source: r-cran-alakazam  ]

Package: r-cran-alakazam (1.2.1-1)

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Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 2,352.2 kB2,843.0 kB [list of files]
arm64 2,347.5 kB2,855.0 kB [list of files]
armel 2,347.7 kB2,854.0 kB [list of files]
armhf 2,348.7 kB2,854.0 kB [list of files]
i386 2,354.9 kB2,845.0 kB [list of files]
mips64el 2,346.8 kB2,861.0 kB [list of files]
mipsel 2,346.6 kB2,857.0 kB [list of files]
ppc64el 2,351.8 kB2,919.0 kB [list of files]
s390x 2,349.0 kB2,839.0 kB [list of files]