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[ Source: murasaki  ]

Package: murasaki-mpi (1.68.6-13 and others)

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homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

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Download murasaki-mpi

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 1.68.6-13+b3 626.1 kB4,010.0 kB [list of files]
arm64 1.68.6-13+b3 548.8 kB4,114.0 kB [list of files]
armel 1.68.6-13+b3 409.5 kB2,948.0 kB [list of files]
armhf 1.68.6-13+b3 418.0 kB2,116.0 kB [list of files]
i386 1.68.6-13+b3 636.0 kB3,740.0 kB [list of files]
mips64el 1.68.6-13+b3 592.0 kB5,394.0 kB [list of files]
mipsel 1.68.6-13+b3 580.4 kB4,750.0 kB [list of files]
ppc64el 1.68.6-13+b2 626.2 kB5,202.0 kB [list of files]
s390x 1.68.6-13+b2 557.7 kB4,266.0 kB [list of files]