Package: bali-phy (3.6.1+dfsg-1)

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Homepage [www.bali-phy.org]

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Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

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dep: libboost-chrono1.74.0 (>= 1.74.0)

C++ representation of time duration, time point, and clocks
dep: libboost-filesystem1.74.0 (>= 1.74.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-program-options1.74.0 (>= 1.74.0)

program options library for C++
dep: libboost-random1.74.0 (>= 1.74.0)

Boost Random Number Library
dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libcairo2 (>= 1.4.10)

Cairo 2D vector graphics library
dep: libgcc-s1 (>= 3.0) [s390x]

GCC support library

dep: libgcc-s1 (>= 3.4) [amd64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

dep: libgcc-s1 (>= 4.5) [arm64, mips64el]
dep: libstdc++6 (>= 9)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)

rec: gnuplot

Command-line driven interactive plotting program.
also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11
rec: r-base

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sug: figtree

graphical phylogenetic tree viewer
sug: seaview

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Download bali-phy

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	6,064.3 kB	35,817.0 kB	[list of files]
arm64	5,434.7 kB	32,461.0 kB	[list of files]
armel	4,569.9 kB	29,779.0 kB	[list of files]
armhf	4,270.2 kB	22,071.0 kB	[list of files]
i386	5,850.5 kB	35,191.0 kB	[list of files]
mips64el	5,622.3 kB	42,347.0 kB	[list of files]
mipsel	5,563.3 kB	40,550.0 kB	[list of files]
ppc64el	6,142.8 kB	40,895.0 kB	[list of files]
s390x	4,982.7 kB	35,461.0 kB	[list of files]