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[ Source: cassiopee  ]

Package: cassiopee (1.0.9-3 and others)

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index and search tool in genomic sequences

Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions.

This package contains the cassiopee and cassiopeeknife tools.

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Download cassiopee

Download for all available architectures
Architecture Version Package Size Installed Size Files
armel 1.0.9-3+b2 16.3 kB54.0 kB [list of files]