Package: khmer (3.0.0~a3+dfsg-4 and others)

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Homepage [khmer.readthedocs.org]

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in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Other Packages Related to khmer

depends

recommends

suggests

enhances

dep: khmer-common

common files for the khmer project tools
dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.32)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.4)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.12)

dep: python3 (>= 3.11~)
dep: python3-screed

short nucleotide read sequence utils in Python 3
dep: zlib1g (>= 1:1.2.3.4)

compression library - runtime

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Architecture	Version	Package Size	Installed Size	Files
amd64	3.0.0~a3+dfsg-4+b2	6,913.1 kB	37,398.0 kB	[list of files]