[ Quellcode: maffilter ]
Paket: maffilter (1.3.1+dfsg-6)
Links für maffilter
Debian-Ressourcen:
Quellcode-Paket maffilter herunterladen:
- [maffilter_1.3.1+dfsg-6.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-6.debian.tar.xz]
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Andreas Tille (QS-Seite)
- Julien Dutheil (QS-Seite)
- Pranav Ballaney (QS-Seite)
Externe Ressourcen:
- Homepage [jydu.github.io]
Ähnliche Pakete:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
Andere Pakete mit Bezug zu maffilter
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams-Bibliothek
-
- dep: libbpp-core4t64 (>= 2.4.1)
- Bio++ Core library
-
- dep: libbpp-phyl-omics3t64 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
-
- dep: libbpp-phyl12t64 (>= 2.4.1)
- Bio++ Phylogenetic library
-
- dep: libbpp-seq-omics3t64 (>= 2.4.1)
- Bio++ Sequence library: genomics components
-
- dep: libbpp-seq12t64 (>= 2.4.1)
- Bio++ Sequence library
-
- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [nicht armel, armhf]
- GCC Support-Bibliothek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 13.1)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)
maffilter herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 259,5 kB | 1.308,0 kB | [Liste der Dateien] |
| arm64 | 237,9 kB | 1.368,0 kB | [Liste der Dateien] |
| armel | 222,9 kB | 1.179,0 kB | [Liste der Dateien] |
| armhf | 228,8 kB | 1.039,0 kB | [Liste der Dateien] |
| i386 | 266,2 kB | 1.271,0 kB | [Liste der Dateien] |
| mips64el | 225,2 kB | 1.489,0 kB | [Liste der Dateien] |
| ppc64el | 254,5 kB | 1.432,0 kB | [Liste der Dateien] |
| s390x | 247,8 kB | 1.320,0 kB | [Liste der Dateien] |