Paket: pizzly (0.37.3+ds-9) [debports]
Links für pizzly
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Quellcode-Paket herunterladen:
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Externe Ressourcen:
- Homepage [github.com]
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Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
Andere Pakete mit Bezug zu pizzly
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- dep: kallisto
- near-optimal RNA-Seq quantification
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- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 4.3)
- GCC Support-Bibliothek
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- dep: libstdc++6 (>= 12.2.0-12)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- Kompressions-Bibliothek - Laufzeit
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- rec: python3-h5py
- general-purpose Python interface to hdf5
pizzly herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| sparc64 (inoffizielle Portierung) | 230,4 kB | 1.062,0 kB | [Liste der Dateien] |