[ Quellcode: ngmlr ]
Paket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2 und andere)
Links für ngmlr
Debian-Ressourcen:
Quellcode-Paket ngmlr herunterladen:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Andere Pakete mit Bezug zu ngmlr
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- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC Support-Bibliothek
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: zlib1g (>= 1:1.1.4)
- Kompressions-Bibliothek - Laufzeit
ngmlr herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| ppc64el | 0.2.7+git20210816.a2a31fb+dfsg-2+b1 | 677,5 kB | 1.301,0 kB | [Liste der Dateien] |