Paket: profphd (1.0.42-3)

Links für profphd

Debian-Ressourcen:

Quellcode-Paket profphd herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [predictprotein.org]

secondary structure and solvent accessibility predictor

This package provides prof(1), the protein secondary structure, accessibility and transmembrane helix predictor from Burkhard Rost. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance.

How well does prof(1) perform?

 * Secondary structure is predicted at an expected average accuracy > 72% for
   the three states helix, strand and loop.

 * Solvent accessibility is predicted at a correlation coefficient
   (correlation between experimentally observed and predicted relative
   solvent accessibility) of 0.54

 * Transmembrane helix prediction has an expected per-residue accuracy of
   about 95%.  The number of false positives, i.e., transmembrane helices
   predicted in globular proteins, is about 2%.

Andere Pakete mit Bezug zu profphd

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: librg-utils-perl

Parser und Programme für Formatkonvertierungen, verwendet von (z.B.) profphd
dep: perl

Larry Wall's Practical Extraction und Report Language
dep: profnet-prof

neural network architecture for profacc
dep: profphd-net

neural network architecture for profphd
dep: profphd-utils

profphd helper utilities convert_seq and filter_hssp

rec: pp-popularity-contest

PredictProtein popularity contest

profphd herunterladen

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