Liste der Dateien in Paket python-cogent in buster für Architektur armhf
/usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/PKG-INFO /usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/dependency_links.txt /usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/requires.txt /usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/top_level.txt /usr/lib/python2.7/dist-packages/cogent/__init__.py /usr/lib/python2.7/dist-packages/cogent/align/__init__.py /usr/lib/python2.7/dist-packages/cogent/align/_compare.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/align/_pairwise_pogs.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/align/algorithm.py /usr/lib/python2.7/dist-packages/cogent/align/align.py /usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py /usr/lib/python2.7/dist-packages/cogent/align/indel_model.py /usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py /usr/lib/python2.7/dist-packages/cogent/align/pairwise.py /usr/lib/python2.7/dist-packages/cogent/align/progressive.py /usr/lib/python2.7/dist-packages/cogent/align/pycompare.py /usr/lib/python2.7/dist-packages/cogent/align/traceback.py /usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py /usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py /usr/lib/python2.7/dist-packages/cogent/align/weights/util.py /usr/lib/python2.7/dist-packages/cogent/app/__init__.py /usr/lib/python2.7/dist-packages/cogent/app/blast.py /usr/lib/python2.7/dist-packages/cogent/app/blat.py /usr/lib/python2.7/dist-packages/cogent/app/bwa.py /usr/lib/python2.7/dist-packages/cogent/app/carnac.py /usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py /usr/lib/python2.7/dist-packages/cogent/app/cdbfasta.py /usr/lib/python2.7/dist-packages/cogent/app/clearcut.py /usr/lib/python2.7/dist-packages/cogent/app/clustalw.py /usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py /usr/lib/python2.7/dist-packages/cogent/app/comrna.py /usr/lib/python2.7/dist-packages/cogent/app/consan.py /usr/lib/python2.7/dist-packages/cogent/app/contrafold.py /usr/lib/python2.7/dist-packages/cogent/app/cove.py /usr/lib/python2.7/dist-packages/cogent/app/dialign.py /usr/lib/python2.7/dist-packages/cogent/app/dotur.py /usr/lib/python2.7/dist-packages/cogent/app/dynalign.py /usr/lib/python2.7/dist-packages/cogent/app/fastq_join.py /usr/lib/python2.7/dist-packages/cogent/app/fasttree.py /usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py /usr/lib/python2.7/dist-packages/cogent/app/flash.py /usr/lib/python2.7/dist-packages/cogent/app/foldalign.py /usr/lib/python2.7/dist-packages/cogent/app/formatdb.py /usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py /usr/lib/python2.7/dist-packages/cogent/app/guppy.py /usr/lib/python2.7/dist-packages/cogent/app/ilm.py /usr/lib/python2.7/dist-packages/cogent/app/infernal.py /usr/lib/python2.7/dist-packages/cogent/app/knetfold.py /usr/lib/python2.7/dist-packages/cogent/app/mafft.py /usr/lib/python2.7/dist-packages/cogent/app/mfold.py /usr/lib/python2.7/dist-packages/cogent/app/mothur.py /usr/lib/python2.7/dist-packages/cogent/app/msms.py /usr/lib/python2.7/dist-packages/cogent/app/muscle.py /usr/lib/python2.7/dist-packages/cogent/app/muscle_v38.py /usr/lib/python2.7/dist-packages/cogent/app/nupack.py /usr/lib/python2.7/dist-packages/cogent/app/pandaseq.py /usr/lib/python2.7/dist-packages/cogent/app/parameters.py /usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py /usr/lib/python2.7/dist-packages/cogent/app/pfold.py /usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py /usr/lib/python2.7/dist-packages/cogent/app/pplacer.py /usr/lib/python2.7/dist-packages/cogent/app/raxml.py /usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py /usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py /usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py /usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py /usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py /usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py /usr/lib/python2.7/dist-packages/cogent/app/rnaview.py /usr/lib/python2.7/dist-packages/cogent/app/rtax.py /usr/lib/python2.7/dist-packages/cogent/app/seqprep.py /usr/lib/python2.7/dist-packages/cogent/app/sfffile.py /usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py /usr/lib/python2.7/dist-packages/cogent/app/sfold.py /usr/lib/python2.7/dist-packages/cogent/app/stride.py /usr/lib/python2.7/dist-packages/cogent/app/uclust.py /usr/lib/python2.7/dist-packages/cogent/app/unafold.py /usr/lib/python2.7/dist-packages/cogent/app/usearch.py /usr/lib/python2.7/dist-packages/cogent/app/util.py /usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py /usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py /usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py /usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py /usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py /usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py /usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py /usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py /usr/lib/python2.7/dist-packages/cogent/core/__init__.py /usr/lib/python2.7/dist-packages/cogent/core/alignment.py /usr/lib/python2.7/dist-packages/cogent/core/alphabet.py /usr/lib/python2.7/dist-packages/cogent/core/annotation.py /usr/lib/python2.7/dist-packages/cogent/core/bitvector.py /usr/lib/python2.7/dist-packages/cogent/core/entity.py /usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py /usr/lib/python2.7/dist-packages/cogent/core/info.py /usr/lib/python2.7/dist-packages/cogent/core/location.py /usr/lib/python2.7/dist-packages/cogent/core/moltype.py /usr/lib/python2.7/dist-packages/cogent/core/profile.py /usr/lib/python2.7/dist-packages/cogent/core/sequence.py /usr/lib/python2.7/dist-packages/cogent/core/tree.py /usr/lib/python2.7/dist-packages/cogent/core/usage.py /usr/lib/python2.7/dist-packages/cogent/data/__init__.py /usr/lib/python2.7/dist-packages/cogent/data/energy_params.py /usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py /usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py /usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py /usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py /usr/lib/python2.7/dist-packages/cogent/db/__init__.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py /usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py /usr/lib/python2.7/dist-packages/cogent/db/ncbi.py /usr/lib/python2.7/dist-packages/cogent/db/pdb.py /usr/lib/python2.7/dist-packages/cogent/db/rfam.py /usr/lib/python2.7/dist-packages/cogent/db/util.py /usr/lib/python2.7/dist-packages/cogent/draw/__init__.py /usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py /usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py /usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py /usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py /usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py /usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py /usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py /usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py /usr/lib/python2.7/dist-packages/cogent/draw/legend.py /usr/lib/python2.7/dist-packages/cogent/draw/linear.py /usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py /usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py /usr/lib/python2.7/dist-packages/cogent/draw/util.py /usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py /usr/lib/python2.7/dist-packages/cogent/evolve/_likelihood_tree.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/evolve/_pairwise_distance.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/evolve/_solved_models.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py /usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py /usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py /usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py /usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py /usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py /usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py /usr/lib/python2.7/dist-packages/cogent/evolve/models.py /usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py /usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py /usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py /usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py /usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py /usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py /usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py /usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py /usr/lib/python2.7/dist-packages/cogent/format/__init__.py /usr/lib/python2.7/dist-packages/cogent/format/alignment.py /usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py /usr/lib/python2.7/dist-packages/cogent/format/clustal.py /usr/lib/python2.7/dist-packages/cogent/format/fasta.py /usr/lib/python2.7/dist-packages/cogent/format/mage.py /usr/lib/python2.7/dist-packages/cogent/format/motif.py /usr/lib/python2.7/dist-packages/cogent/format/nexus.py /usr/lib/python2.7/dist-packages/cogent/format/pdb.py /usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py /usr/lib/python2.7/dist-packages/cogent/format/phylip.py /usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py /usr/lib/python2.7/dist-packages/cogent/format/stockholm.py /usr/lib/python2.7/dist-packages/cogent/format/structure.py /usr/lib/python2.7/dist-packages/cogent/format/table.py /usr/lib/python2.7/dist-packages/cogent/format/text_tree.py /usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py /usr/lib/python2.7/dist-packages/cogent/maths/__init__.py /usr/lib/python2.7/dist-packages/cogent/maths/_period.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py /usr/lib/python2.7/dist-packages/cogent/maths/fit_function.py /usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py /usr/lib/python2.7/dist-packages/cogent/maths/geometry.py /usr/lib/python2.7/dist-packages/cogent/maths/markov.py /usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py /usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py /usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponential_integration.py /usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py /usr/lib/python2.7/dist-packages/cogent/maths/matrix_logarithm.py /usr/lib/python2.7/dist-packages/cogent/maths/optimisers.py /usr/lib/python2.7/dist-packages/cogent/maths/period.py /usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py /usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimize.py /usr/lib/python2.7/dist-packages/cogent/maths/simannealingoptimiser.py /usr/lib/python2.7/dist-packages/cogent/maths/solve.py /usr/lib/python2.7/dist-packages/cogent/maths/spatial/__init__.py /usr/lib/python2.7/dist-packages/cogent/maths/spatial/ckd3.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/maths/stats/__init__.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/alpha_diversity.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/__init__.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/util.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/distribution.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/histogram.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/jackknife.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/rarefaction.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/special.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/test.py /usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py /usr/lib/python2.7/dist-packages/cogent/maths/svd.py /usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py /usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py /usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py /usr/lib/python2.7/dist-packages/cogent/motif/__init__.py /usr/lib/python2.7/dist-packages/cogent/motif/k_word.py /usr/lib/python2.7/dist-packages/cogent/motif/util.py /usr/lib/python2.7/dist-packages/cogent/parse/__init__.py /usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py /usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py /usr/lib/python2.7/dist-packages/cogent/parse/binary_sff.py /usr/lib/python2.7/dist-packages/cogent/parse/blast.py /usr/lib/python2.7/dist-packages/cogent/parse/blast_xml.py /usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py /usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py /usr/lib/python2.7/dist-packages/cogent/parse/carnac.py /usr/lib/python2.7/dist-packages/cogent/parse/cigar.py /usr/lib/python2.7/dist-packages/cogent/parse/clustal.py /usr/lib/python2.7/dist-packages/cogent/parse/cmfinder.py /usr/lib/python2.7/dist-packages/cogent/parse/column.py /usr/lib/python2.7/dist-packages/cogent/parse/comrna.py /usr/lib/python2.7/dist-packages/cogent/parse/consan.py /usr/lib/python2.7/dist-packages/cogent/parse/contrafold.py /usr/lib/python2.7/dist-packages/cogent/parse/cove.py /usr/lib/python2.7/dist-packages/cogent/parse/ct.py /usr/lib/python2.7/dist-packages/cogent/parse/cut.py /usr/lib/python2.7/dist-packages/cogent/parse/cutg.py /usr/lib/python2.7/dist-packages/cogent/parse/dialign.py /usr/lib/python2.7/dist-packages/cogent/parse/dotur.py /usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py /usr/lib/python2.7/dist-packages/cogent/parse/ebi.py /usr/lib/python2.7/dist-packages/cogent/parse/fasta.py /usr/lib/python2.7/dist-packages/cogent/parse/fastq.py /usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py /usr/lib/python2.7/dist-packages/cogent/parse/flowgram_collection.py /usr/lib/python2.7/dist-packages/cogent/parse/flowgram_parser.py /usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py /usr/lib/python2.7/dist-packages/cogent/parse/gbseq.py /usr/lib/python2.7/dist-packages/cogent/parse/gcg.py /usr/lib/python2.7/dist-packages/cogent/parse/genbank.py /usr/lib/python2.7/dist-packages/cogent/parse/gff.py /usr/lib/python2.7/dist-packages/cogent/parse/gibbs.py /usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py /usr/lib/python2.7/dist-packages/cogent/parse/hmmscan.py /usr/lib/python2.7/dist-packages/cogent/parse/illumina_sequence.py /usr/lib/python2.7/dist-packages/cogent/parse/ilm.py /usr/lib/python2.7/dist-packages/cogent/parse/infernal.py /usr/lib/python2.7/dist-packages/cogent/parse/kegg_fasta.py /usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py /usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py /usr/lib/python2.7/dist-packages/cogent/parse/kegg_taxonomy.py /usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py /usr/lib/python2.7/dist-packages/cogent/parse/locuslink.py /usr/lib/python2.7/dist-packages/cogent/parse/macsim.py /usr/lib/python2.7/dist-packages/cogent/parse/mage.py /usr/lib/python2.7/dist-packages/cogent/parse/meme.py /usr/lib/python2.7/dist-packages/cogent/parse/mfold.py /usr/lib/python2.7/dist-packages/cogent/parse/mothur.py /usr/lib/python2.7/dist-packages/cogent/parse/msms.py /usr/lib/python2.7/dist-packages/cogent/parse/ncbi_taxonomy.py /usr/lib/python2.7/dist-packages/cogent/parse/newick.py /usr/lib/python2.7/dist-packages/cogent/parse/nexus.py /usr/lib/python2.7/dist-packages/cogent/parse/nupack.py /usr/lib/python2.7/dist-packages/cogent/parse/paml.py /usr/lib/python2.7/dist-packages/cogent/parse/paml_matrix.py /usr/lib/python2.7/dist-packages/cogent/parse/pdb.py /usr/lib/python2.7/dist-packages/cogent/parse/pfold.py /usr/lib/python2.7/dist-packages/cogent/parse/phylip.py /usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py /usr/lib/python2.7/dist-packages/cogent/parse/psl.py /usr/lib/python2.7/dist-packages/cogent/parse/rdb.py /usr/lib/python2.7/dist-packages/cogent/parse/record.py /usr/lib/python2.7/dist-packages/cogent/parse/record_finder.py /usr/lib/python2.7/dist-packages/cogent/parse/rfam.py /usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py /usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py /usr/lib/python2.7/dist-packages/cogent/parse/rnaalifold.py /usr/lib/python2.7/dist-packages/cogent/parse/rnaforester.py /usr/lib/python2.7/dist-packages/cogent/parse/rnashapes.py /usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py /usr/lib/python2.7/dist-packages/cogent/parse/sequence.py /usr/lib/python2.7/dist-packages/cogent/parse/sfold.py /usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py /usr/lib/python2.7/dist-packages/cogent/parse/stockholm.py /usr/lib/python2.7/dist-packages/cogent/parse/stride.py /usr/lib/python2.7/dist-packages/cogent/parse/structure.py /usr/lib/python2.7/dist-packages/cogent/parse/table.py /usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py /usr/lib/python2.7/dist-packages/cogent/parse/tree.py /usr/lib/python2.7/dist-packages/cogent/parse/tree_xml.py /usr/lib/python2.7/dist-packages/cogent/parse/unafold.py /usr/lib/python2.7/dist-packages/cogent/parse/unigene.py /usr/lib/python2.7/dist-packages/cogent/phylo/__init__.py /usr/lib/python2.7/dist-packages/cogent/phylo/consensus.py /usr/lib/python2.7/dist-packages/cogent/phylo/distance.py /usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py /usr/lib/python2.7/dist-packages/cogent/phylo/maximum_likelihood.py /usr/lib/python2.7/dist-packages/cogent/phylo/nj.py /usr/lib/python2.7/dist-packages/cogent/phylo/tree_collection.py /usr/lib/python2.7/dist-packages/cogent/phylo/tree_space.py /usr/lib/python2.7/dist-packages/cogent/phylo/util.py /usr/lib/python2.7/dist-packages/cogent/recalculation/__init__.py /usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py /usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py /usr/lib/python2.7/dist-packages/cogent/recalculation/scope.py /usr/lib/python2.7/dist-packages/cogent/recalculation/setting.py /usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py /usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py /usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py /usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py /usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py /usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py /usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py /usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py /usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py /usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py /usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py /usr/lib/python2.7/dist-packages/cogent/struct/__init__.py /usr/lib/python2.7/dist-packages/cogent/struct/_asa.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/struct/_contact.arm-linux-gnueabihf.so /usr/lib/python2.7/dist-packages/cogent/struct/annotation.py /usr/lib/python2.7/dist-packages/cogent/struct/asa.py /usr/lib/python2.7/dist-packages/cogent/struct/contact.py /usr/lib/python2.7/dist-packages/cogent/struct/dihedral.py /usr/lib/python2.7/dist-packages/cogent/struct/knots.py /usr/lib/python2.7/dist-packages/cogent/struct/manipulation.py /usr/lib/python2.7/dist-packages/cogent/struct/pairs_util.py /usr/lib/python2.7/dist-packages/cogent/struct/rna2d.py /usr/lib/python2.7/dist-packages/cogent/struct/selection.py /usr/lib/python2.7/dist-packages/cogent/util/__init__.py /usr/lib/python2.7/dist-packages/cogent/util/array.py /usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py /usr/lib/python2.7/dist-packages/cogent/util/datatypes.py /usr/lib/python2.7/dist-packages/cogent/util/dict2d.py /usr/lib/python2.7/dist-packages/cogent/util/dict_array.py /usr/lib/python2.7/dist-packages/cogent/util/misc.py /usr/lib/python2.7/dist-packages/cogent/util/modules.py /usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py /usr/lib/python2.7/dist-packages/cogent/util/organizer.py /usr/lib/python2.7/dist-packages/cogent/util/parallel.py /usr/lib/python2.7/dist-packages/cogent/util/progress_display.py /usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py /usr/lib/python2.7/dist-packages/cogent/util/table.py /usr/lib/python2.7/dist-packages/cogent/util/terminal.py /usr/lib/python2.7/dist-packages/cogent/util/transform.py /usr/lib/python2.7/dist-packages/cogent/util/trie.py /usr/lib/python2.7/dist-packages/cogent/util/unit_test.py /usr/lib/python2.7/dist-packages/cogent/util/update_version.py /usr/lib/python2.7/dist-packages/cogent/util/warning.py /usr/share/doc/python-cogent/README.Debian /usr/share/doc/python-cogent/README.test /usr/share/doc/python-cogent/changelog.Debian.gz /usr/share/doc/python-cogent/changelog.gz /usr/share/doc/python-cogent/copyright /usr/share/doc/python-cogent/run-unit-test /usr/share/doc/python-cogent/tests/__init__.py /usr/share/doc/python-cogent/tests/alltests.py.gz /usr/share/doc/python-cogent/tests/benchmark.py.gz /usr/share/doc/python-cogent/tests/benchmark_aligning.py /usr/share/doc/python-cogent/tests/data/1A1X.pdb /usr/share/doc/python-cogent/tests/data/1LJO.pdb /usr/share/doc/python-cogent/tests/data/2E12.pdb /usr/share/doc/python-cogent/tests/data/F6AVWTA01.sff.gz /usr/share/doc/python-cogent/tests/data/Homo_sapiens_codon_usage.pri.gz /usr/share/doc/python-cogent/tests/data/annotated_seq.gb.gz /usr/share/doc/python-cogent/tests/data/bowtie_output.map /usr/share/doc/python-cogent/tests/data/brca1.fasta /usr/share/doc/python-cogent/tests/data/brca1_5.250.paml /usr/share/doc/python-cogent/tests/data/brca1_5.paml /usr/share/doc/python-cogent/tests/data/brca1_5.tree /usr/share/doc/python-cogent/tests/data/fastq.txt /usr/share/doc/python-cogent/tests/data/formattest.aln.gz /usr/share/doc/python-cogent/tests/data/formattest.fasta /usr/share/doc/python-cogent/tests/data/formattest.gde /usr/share/doc/python-cogent/tests/data/formattest.msf /usr/share/doc/python-cogent/tests/data/formattest.paml /usr/share/doc/python-cogent/tests/data/formattest.phylip /usr/share/doc/python-cogent/tests/data/interleaved.phylip.gz /usr/share/doc/python-cogent/tests/data/murphy.tree /usr/share/doc/python-cogent/tests/data/primates_brca1.fasta /usr/share/doc/python-cogent/tests/data/primates_brca1.tree /usr/share/doc/python-cogent/tests/data/test.psl /usr/share/doc/python-cogent/tests/data/test.sff /usr/share/doc/python-cogent/tests/test_align/__init__.py /usr/share/doc/python-cogent/tests/test_align/test_algorithm.py.gz /usr/share/doc/python-cogent/tests/test_align/test_align.py.gz /usr/share/doc/python-cogent/tests/test_align/test_weights/__init__.py /usr/share/doc/python-cogent/tests/test_align/test_weights/test_methods.py.gz /usr/share/doc/python-cogent/tests/test_align/test_weights/test_util.py.gz /usr/share/doc/python-cogent/tests/test_app/__init__.py /usr/share/doc/python-cogent/tests/test_app/test_blast.py.gz /usr/share/doc/python-cogent/tests/test_app/test_blat.py.gz /usr/share/doc/python-cogent/tests/test_app/test_bwa.py.gz /usr/share/doc/python-cogent/tests/test_app/test_carnac.py /usr/share/doc/python-cogent/tests/test_app/test_cd_hit.py.gz /usr/share/doc/python-cogent/tests/test_app/test_cdbfasta.py /usr/share/doc/python-cogent/tests/test_app/test_clearcut.py.gz /usr/share/doc/python-cogent/tests/test_app/test_clustalw.py.gz /usr/share/doc/python-cogent/tests/test_app/test_cmfinder.py.gz /usr/share/doc/python-cogent/tests/test_app/test_comrna.py /usr/share/doc/python-cogent/tests/test_app/test_consan.py /usr/share/doc/python-cogent/tests/test_app/test_contrafold.py /usr/share/doc/python-cogent/tests/test_app/test_cove.py.gz /usr/share/doc/python-cogent/tests/test_app/test_dialign.py.gz /usr/share/doc/python-cogent/tests/test_app/test_dotur.py.gz /usr/share/doc/python-cogent/tests/test_app/test_dynalign.py /usr/share/doc/python-cogent/tests/test_app/test_fastq_join.py.gz /usr/share/doc/python-cogent/tests/test_app/test_fasttree.py.gz /usr/share/doc/python-cogent/tests/test_app/test_fasttree_v1.py.gz /usr/share/doc/python-cogent/tests/test_app/test_flash.py.gz /usr/share/doc/python-cogent/tests/test_app/test_foldalign.py /usr/share/doc/python-cogent/tests/test_app/test_formatdb.py.gz /usr/share/doc/python-cogent/tests/test_app/test_gctmpca.py.gz /usr/share/doc/python-cogent/tests/test_app/test_guppy.py.gz /usr/share/doc/python-cogent/tests/test_app/test_ilm.py.gz /usr/share/doc/python-cogent/tests/test_app/test_infernal.py.gz /usr/share/doc/python-cogent/tests/test_app/test_knetfold.py /usr/share/doc/python-cogent/tests/test_app/test_mafft.py.gz /usr/share/doc/python-cogent/tests/test_app/test_mfold.py /usr/share/doc/python-cogent/tests/test_app/test_mothur.py.gz /usr/share/doc/python-cogent/tests/test_app/test_msms.py /usr/share/doc/python-cogent/tests/test_app/test_muscle.py.gz /usr/share/doc/python-cogent/tests/test_app/test_muscle_v38.py.gz /usr/share/doc/python-cogent/tests/test_app/test_nupack.py /usr/share/doc/python-cogent/tests/test_app/test_pandaseq.py.gz /usr/share/doc/python-cogent/tests/test_app/test_parameters.py.gz /usr/share/doc/python-cogent/tests/test_app/test_parsinsert.py.gz /usr/share/doc/python-cogent/tests/test_app/test_pfold.py.gz /usr/share/doc/python-cogent/tests/test_app/test_pknotsrg.py /usr/share/doc/python-cogent/tests/test_app/test_pplacer.py.gz /usr/share/doc/python-cogent/tests/test_app/test_raxml.py.gz /usr/share/doc/python-cogent/tests/test_app/test_raxml_v730.py.gz /usr/share/doc/python-cogent/tests/test_app/test_rdp_classifier.py.gz /usr/share/doc/python-cogent/tests/test_app/test_rdp_classifier20.py.gz /usr/share/doc/python-cogent/tests/test_app/test_rnaalifold.py /usr/share/doc/python-cogent/tests/test_app/test_rnaforester.py.gz /usr/share/doc/python-cogent/tests/test_app/test_rnaview.py.gz /usr/share/doc/python-cogent/tests/test_app/test_rtax.py.gz /usr/share/doc/python-cogent/tests/test_app/test_seqprep.py.gz /usr/share/doc/python-cogent/tests/test_app/test_sfffile.py /usr/share/doc/python-cogent/tests/test_app/test_sffinfo.py.gz /usr/share/doc/python-cogent/tests/test_app/test_sfold.py /usr/share/doc/python-cogent/tests/test_app/test_stride.py /usr/share/doc/python-cogent/tests/test_app/test_uclust.py.gz /usr/share/doc/python-cogent/tests/test_app/test_unafold.py /usr/share/doc/python-cogent/tests/test_app/test_usearch.py.gz /usr/share/doc/python-cogent/tests/test_app/test_util.py.gz /usr/share/doc/python-cogent/tests/test_app/test_vienna_package.py.gz /usr/share/doc/python-cogent/tests/test_cluster/__init__.py /usr/share/doc/python-cogent/tests/test_cluster/test_UPGMA.py.gz /usr/share/doc/python-cogent/tests/test_cluster/test_approximate_mds.py.gz /usr/share/doc/python-cogent/tests/test_cluster/test_goodness_of_fit.py.gz /usr/share/doc/python-cogent/tests/test_cluster/test_metric_scaling.py.gz /usr/share/doc/python-cogent/tests/test_cluster/test_nmds.py /usr/share/doc/python-cogent/tests/test_cluster/test_procrustes.py.gz /usr/share/doc/python-cogent/tests/test_core/__init__.py /usr/share/doc/python-cogent/tests/test_core/test_alignment.py.gz /usr/share/doc/python-cogent/tests/test_core/test_alphabet.py.gz /usr/share/doc/python-cogent/tests/test_core/test_annotation.py.gz /usr/share/doc/python-cogent/tests/test_core/test_bitvector.py.gz /usr/share/doc/python-cogent/tests/test_core/test_core_standalone.py.gz /usr/share/doc/python-cogent/tests/test_core/test_entity.py.gz /usr/share/doc/python-cogent/tests/test_core/test_features.rst.gz /usr/share/doc/python-cogent/tests/test_core/test_genetic_code.py.gz /usr/share/doc/python-cogent/tests/test_core/test_info.py.gz /usr/share/doc/python-cogent/tests/test_core/test_location.py.gz /usr/share/doc/python-cogent/tests/test_core/test_maps.py.gz /usr/share/doc/python-cogent/tests/test_core/test_moltype.py.gz /usr/share/doc/python-cogent/tests/test_core/test_profile.py.gz /usr/share/doc/python-cogent/tests/test_core/test_seq_aln_integration.py.gz /usr/share/doc/python-cogent/tests/test_core/test_sequence.py.gz /usr/share/doc/python-cogent/tests/test_core/test_tree.py.gz /usr/share/doc/python-cogent/tests/test_core/test_usage.py.gz /usr/share/doc/python-cogent/tests/test_data/__init__.py /usr/share/doc/python-cogent/tests/test_data/test_molecular_weight.py /usr/share/doc/python-cogent/tests/test_db/__init__.py /usr/share/doc/python-cogent/tests/test_db/test_ensembl/__init__.py /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_assembly.py.gz /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_compara.py.gz /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_database.py /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_feature_level.py /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_genome.py.gz /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_host.py.gz /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_metazoa.py /usr/share/doc/python-cogent/tests/test_db/test_ensembl/test_species.py /usr/share/doc/python-cogent/tests/test_db/test_ncbi.py.gz /usr/share/doc/python-cogent/tests/test_db/test_pdb.py /usr/share/doc/python-cogent/tests/test_db/test_rfam.py /usr/share/doc/python-cogent/tests/test_db/test_util.py /usr/share/doc/python-cogent/tests/test_dictarray.rst /usr/share/doc/python-cogent/tests/test_draw.py.gz /usr/share/doc/python-cogent/tests/test_draw/__init__.py /usr/share/doc/python-cogent/tests/test_draw/test_distribution_plots.py.gz /usr/share/doc/python-cogent/tests/test_draw/test_matplotlib/test_arrow_rates.py /usr/share/doc/python-cogent/tests/test_draw/test_matplotlib/test_codon_usage.py.gz /usr/share/doc/python-cogent/tests/test_draw/test_matplotlib/test_dinuc.py /usr/share/doc/python-cogent/tests/test_draw/test_matplotlib/test_multivariate_plot.py.gz /usr/share/doc/python-cogent/tests/test_evolve/__init__.py /usr/share/doc/python-cogent/tests/test_evolve/test_best_likelihood.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_bootstrap.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_coevolution.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_likelihood_function.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_models.py /usr/share/doc/python-cogent/tests/test_evolve/test_motifchange.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_newq.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_pairwise_distance.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_parameter_controller.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_scale_rules.py.gz /usr/share/doc/python-cogent/tests/test_evolve/test_simulation.py /usr/share/doc/python-cogent/tests/test_evolve/test_substitution_model.py.gz /usr/share/doc/python-cogent/tests/test_format/__init__.py /usr/share/doc/python-cogent/tests/test_format/test_bedgraph.py.gz /usr/share/doc/python-cogent/tests/test_format/test_clustal.py /usr/share/doc/python-cogent/tests/test_format/test_fasta.py /usr/share/doc/python-cogent/tests/test_format/test_mage.py.gz /usr/share/doc/python-cogent/tests/test_format/test_pdb_color.py.gz /usr/share/doc/python-cogent/tests/test_format/test_stockholm.py /usr/share/doc/python-cogent/tests/test_format/test_xyzrn.py /usr/share/doc/python-cogent/tests/test_maths/__init__.py /usr/share/doc/python-cogent/tests/test_maths/test_distance_transform.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_fit_function.py /usr/share/doc/python-cogent/tests/test_maths/test_function_optimisation.py /usr/share/doc/python-cogent/tests/test_maths/test_geometry.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_matrix/__init__.py /usr/share/doc/python-cogent/tests/test_maths/test_matrix/test_distance.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_matrix_exponential_integration.py /usr/share/doc/python-cogent/tests/test_maths/test_matrix_logarithm.py /usr/share/doc/python-cogent/tests/test_maths/test_optimisers.py /usr/share/doc/python-cogent/tests/test_maths/test_period.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_spatial/__init__.py /usr/share/doc/python-cogent/tests/test_maths/test_spatial/test_ckd3.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/__init__.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_alpha_diversity.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_cai/__init__.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_cai/test_adaptor.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_cai/test_get_by_cai.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_cai/test_util.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_distribution.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_histogram.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_information_criteria.py /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_jackknife.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_ks.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_period.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_rarefaction.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_special.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_test.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_stats/test_util.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_svd.py /usr/share/doc/python-cogent/tests/test_maths/test_unifrac/__init__.py /usr/share/doc/python-cogent/tests/test_maths/test_unifrac/test_fast_tree.py.gz /usr/share/doc/python-cogent/tests/test_maths/test_unifrac/test_fast_unifrac.py.gz /usr/share/doc/python-cogent/tests/test_motif/__init__.py /usr/share/doc/python-cogent/tests/test_motif/test_util.py.gz /usr/share/doc/python-cogent/tests/test_parse/__init__.py /usr/share/doc/python-cogent/tests/test_parse/test_aaindex.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_agilent_microarray.py /usr/share/doc/python-cogent/tests/test_parse/test_binary_sff.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_blast.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_blast_xml.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_bowtie.py /usr/share/doc/python-cogent/tests/test_parse/test_bpseq.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_cigar.py /usr/share/doc/python-cogent/tests/test_parse/test_clustal.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_column.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_comrna.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_consan.py /usr/share/doc/python-cogent/tests/test_parse/test_cove.py /usr/share/doc/python-cogent/tests/test_parse/test_ct.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_cut.py /usr/share/doc/python-cogent/tests/test_parse/test_cutg.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_dialign.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_dotur.py /usr/share/doc/python-cogent/tests/test_parse/test_ebi.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_fasta.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_fastq.py /usr/share/doc/python-cogent/tests/test_parse/test_flowgram.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_flowgram_collection.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_flowgram_parser.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_gbseq.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_genbank.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_gff.py /usr/share/doc/python-cogent/tests/test_parse/test_gibbs.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_greengenes.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_hmmscan.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_illumina_sequence.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_ilm.py /usr/share/doc/python-cogent/tests/test_parse/test_infernal.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_kegg_fasta.py /usr/share/doc/python-cogent/tests/test_parse/test_kegg_ko.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_kegg_pos.py /usr/share/doc/python-cogent/tests/test_parse/test_kegg_taxonomy.py /usr/share/doc/python-cogent/tests/test_parse/test_locuslink.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_mage.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_meme.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_mothur.py /usr/share/doc/python-cogent/tests/test_parse/test_msms.py /usr/share/doc/python-cogent/tests/test_parse/test_ncbi_taxonomy.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_nexus.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_nupack.py /usr/share/doc/python-cogent/tests/test_parse/test_pamlmatrix.py /usr/share/doc/python-cogent/tests/test_parse/test_pdb.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_phylip.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_pknotsrg.py /usr/share/doc/python-cogent/tests/test_parse/test_psl.py /usr/share/doc/python-cogent/tests/test_parse/test_rdb.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_record.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_record_finder.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_rfam.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_rna_fold.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_rna_plot.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_rnaalifold.py /usr/share/doc/python-cogent/tests/test_parse/test_rnaforester.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_rnaview.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_sprinzl.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_stockholm.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_stride.py /usr/share/doc/python-cogent/tests/test_parse/test_structure.py /usr/share/doc/python-cogent/tests/test_parse/test_tinyseq.py /usr/share/doc/python-cogent/tests/test_parse/test_tree.py.gz /usr/share/doc/python-cogent/tests/test_parse/test_unigene.py.gz /usr/share/doc/python-cogent/tests/test_phylo.py.gz /usr/share/doc/python-cogent/tests/test_recalculation.rst.gz /usr/share/doc/python-cogent/tests/test_seqsim/__init__.py /usr/share/doc/python-cogent/tests/test_seqsim/test_analysis.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_birth_death.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_markov.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_microarray.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_microarray_normalize.py /usr/share/doc/python-cogent/tests/test_seqsim/test_randomization.py /usr/share/doc/python-cogent/tests/test_seqsim/test_searchpath.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_sequence_generators.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_tree.py.gz /usr/share/doc/python-cogent/tests/test_seqsim/test_usage.py.gz /usr/share/doc/python-cogent/tests/test_struct/__init__.py /usr/share/doc/python-cogent/tests/test_struct/test_annotation.py /usr/share/doc/python-cogent/tests/test_struct/test_asa.py.gz /usr/share/doc/python-cogent/tests/test_struct/test_contact.py /usr/share/doc/python-cogent/tests/test_struct/test_dihedral.py.gz /usr/share/doc/python-cogent/tests/test_struct/test_knots.py.gz /usr/share/doc/python-cogent/tests/test_struct/test_manipulation.py /usr/share/doc/python-cogent/tests/test_struct/test_pairs_util.py.gz /usr/share/doc/python-cogent/tests/test_struct/test_rna2d.py.gz /usr/share/doc/python-cogent/tests/test_struct/test_selection.py /usr/share/doc/python-cogent/tests/test_util/__init__.py /usr/share/doc/python-cogent/tests/test_util/test_array.py.gz /usr/share/doc/python-cogent/tests/test_util/test_dict2d.py.gz /usr/share/doc/python-cogent/tests/test_util/test_misc.py.gz /usr/share/doc/python-cogent/tests/test_util/test_organizer.py.gz /usr/share/doc/python-cogent/tests/test_util/test_recode_alignment.py.gz /usr/share/doc/python-cogent/tests/test_util/test_table.rst.gz /usr/share/doc/python-cogent/tests/test_util/test_transform.py.gz /usr/share/doc/python-cogent/tests/test_util/test_trie.py.gz /usr/share/doc/python-cogent/tests/test_util/test_unit_test.py.gz /usr/share/doc/python-cogent/tests/timetrial.py