Paket: atac (0~20150903+r2013-6)
Links für atac
Debian-Ressourcen:
Quellcode-Paket kmer herunterladen:
- [kmer_0~20150903+r2013-6.dsc]
- [kmer_0~20150903+r2013.orig.tar.gz]
- [kmer_0~20150903+r2013-6.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [kmer.sourceforge.net]
Ähnliche Pakete:
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
Andere Pakete mit Bezug zu atac
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auch ein virtuelles Paket, bereitgestellt durch gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: leaff
- biological sequence library utilities and applications
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- dep: libc6 (>= 2.17)
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auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- Perl-Modul zum Durchsuchen des Pfads nach ausführbaren Programmen
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- dep: libgcc1 (>= 1:3.0)
- GCC Support-Bibliothek
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- dep: libstdc++6 (>= 5.2)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: meryl
- in- and out-of-core kmer counting and utilities
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- dep: perl
- Larry Wall's Practical Extraction und Report Language
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- dep: python
- Interaktive objektorientierte Hochsprache (Python2-Version)
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- dep: python2.7
- Interaktive, objektorientierte, höhere Programmiersprache (Version 2.7)
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- rec: kmer-examples
- sample data for kmer suite of tools for DNA sequence analysis
atac herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| arm64 | 362,8 kB | 2.547,0 kB | [Liste der Dateien] |