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/usr/bin/bp_aacomp
/usr/bin/bp_biofetch_genbank_proxy
/usr/bin/bp_bioflat_index
/usr/bin/bp_biogetseq
/usr/bin/bp_blast2tree
/usr/bin/bp_bulk_load_gff
/usr/bin/bp_chaos_plot
/usr/bin/bp_classify_hits_kingdom
/usr/bin/bp_composite_LD
/usr/bin/bp_das_server
/usr/bin/bp_dbsplit
/usr/bin/bp_download_query_genbank
/usr/bin/bp_extract_feature_seq
/usr/bin/bp_fast_load_gff
/usr/bin/bp_fastam9_to_table
/usr/bin/bp_fetch
/usr/bin/bp_filter_search
/usr/bin/bp_find-blast-matches
/usr/bin/bp_flanks
/usr/bin/bp_gccalc
/usr/bin/bp_genbank2gff
/usr/bin/bp_genbank2gff3
/usr/bin/bp_generate_histogram
/usr/bin/bp_heterogeneity_test
/usr/bin/bp_hivq
/usr/bin/bp_hmmer_to_table
/usr/bin/bp_index
/usr/bin/bp_load_gff
/usr/bin/bp_local_taxonomydb_query
/usr/bin/bp_make_mrna_protein
/usr/bin/bp_mask_by_search
/usr/bin/bp_meta_gff
/usr/bin/bp_mrtrans
/usr/bin/bp_mutate
/usr/bin/bp_netinstall
/usr/bin/bp_nexus2nh
/usr/bin/bp_nrdb
/usr/bin/bp_oligo_count
/usr/bin/bp_parse_hmmsearch
/usr/bin/bp_process_gadfly
/usr/bin/bp_process_sgd
/usr/bin/bp_process_wormbase
/usr/bin/bp_query_entrez_taxa
/usr/bin/bp_remote_blast
/usr/bin/bp_revtrans-motif
/usr/bin/bp_search2alnblocks
/usr/bin/bp_search2gff
/usr/bin/bp_search2table
/usr/bin/bp_search2tribe
/usr/bin/bp_seq_length
/usr/bin/bp_seqconvert
/usr/bin/bp_seqcut
/usr/bin/bp_seqfeature_delete
/usr/bin/bp_seqfeature_gff3
/usr/bin/bp_seqfeature_load
/usr/bin/bp_seqpart
/usr/bin/bp_seqret
/usr/bin/bp_seqretsplit
/usr/bin/bp_split_seq
/usr/bin/bp_sreformat
/usr/bin/bp_taxid4species
/usr/bin/bp_taxonomy2tree
/usr/bin/bp_translate_seq
/usr/bin/bp_tree2pag
/usr/bin/bp_unflatten_seq
/usr/share/doc/bioperl/AUTHORS.gz
/usr/share/doc/bioperl/BUGS.gz
/usr/share/doc/bioperl/DEPRECATED
/usr/share/doc/bioperl/README.md.gz
/usr/share/doc/bioperl/changelog.Debian.gz
/usr/share/doc/bioperl/changelog.gz
/usr/share/doc/bioperl/copyright
/usr/share/doc/bioperl/examples/Bio-DB-GFF/load_ucsc.pl.gz
/usr/share/doc/bioperl/examples/align/FastAlign.pl.gz
/usr/share/doc/bioperl/examples/align/align_on_codons.pl.gz
/usr/share/doc/bioperl/examples/align/aligntutorial.pl
/usr/share/doc/bioperl/examples/align/clustalw.pl.gz
/usr/share/doc/bioperl/examples/align/simplealign.pl.gz
/usr/share/doc/bioperl/examples/bioperl.pl.gz
/usr/share/doc/bioperl/examples/cluster/dbsnp.pl
/usr/share/doc/bioperl/examples/contributed/nmrpdb_parse.pl.gz
/usr/share/doc/bioperl/examples/contributed/prosite2perl.pl
/usr/share/doc/bioperl/examples/contributed/rebase2list.pl
/usr/share/doc/bioperl/examples/db/dbfetch.gz
/usr/share/doc/bioperl/examples/db/est_tissue_query.pl.gz
/usr/share/doc/bioperl/examples/db/gb2features.pl.gz
/usr/share/doc/bioperl/examples/db/getGenBank.pl
/usr/share/doc/bioperl/examples/db/get_seqs.pl
/usr/share/doc/bioperl/examples/db/rfetch.pl
/usr/share/doc/bioperl/examples/db/use_registry.pl
/usr/share/doc/bioperl/examples/generate_random_seq.pl
/usr/share/doc/bioperl/examples/liveseq/change_gene.pl
/usr/share/doc/bioperl/examples/longorf.pl.gz
/usr/share/doc/bioperl/examples/make_primers.pl.gz
/usr/share/doc/bioperl/examples/popgen/parse_calc_stats.pl
/usr/share/doc/bioperl/examples/quality/svgtrace.pl
/usr/share/doc/bioperl/examples/rev_and_trans.pl
/usr/share/doc/bioperl/examples/revcom_dir.pl
/usr/share/doc/bioperl/examples/root/README.gz
/usr/share/doc/bioperl/examples/root/exceptions1.pl.gz
/usr/share/doc/bioperl/examples/root/exceptions2.pl.gz
/usr/share/doc/bioperl/examples/root/exceptions3.pl
/usr/share/doc/bioperl/examples/root/exceptions4.pl
/usr/share/doc/bioperl/examples/searchio/blast_example.pl.gz
/usr/share/doc/bioperl/examples/searchio/custom_writer.pl
/usr/share/doc/bioperl/examples/searchio/hitwriter.pl
/usr/share/doc/bioperl/examples/searchio/hspwriter.pl
/usr/share/doc/bioperl/examples/searchio/htmlwriter.pl
/usr/share/doc/bioperl/examples/searchio/psiblast_features.pl
/usr/share/doc/bioperl/examples/searchio/psiblast_iterations.pl
/usr/share/doc/bioperl/examples/searchio/rawwriter.pl
/usr/share/doc/bioperl/examples/searchio/resultwriter.pl
/usr/share/doc/bioperl/examples/searchio/waba2gff.pl
/usr/share/doc/bioperl/examples/searchio/waba2gff3.pl.gz
/usr/share/doc/bioperl/examples/sirna/TAG
/usr/share/doc/bioperl/examples/sirna/rnai_finder.cgi.gz
/usr/share/doc/bioperl/examples/structure/structure-io.pl
/usr/share/doc/bioperl/examples/subsequence.cgi.gz
/usr/share/doc/bioperl/examples/tk/gsequence.pl.gz
/usr/share/doc/bioperl/examples/tk/hitdisplay.pl
/usr/share/doc/bioperl/examples/tools/extract_genes.pl
/usr/share/doc/bioperl/examples/tools/gb_to_gff.pl
/usr/share/doc/bioperl/examples/tools/gff2ps.pl.gz
/usr/share/doc/bioperl/examples/tools/parse_codeml.pl
/usr/share/doc/bioperl/examples/tools/psw.pl
/usr/share/doc/bioperl/examples/tools/reverse-translate.pl
/usr/share/doc/bioperl/examples/tools/run_genscan.pl
/usr/share/doc/bioperl/examples/tools/run_primer3.pl
/usr/share/doc/bioperl/examples/tools/seq_pattern.pl
/usr/share/doc/bioperl/examples/tools/standaloneblast.pl.gz
/usr/share/doc/bioperl/examples/tree/paup2phylip.pl
/usr/share/man/man1/bp_aacomp.1p.gz
/usr/share/man/man1/bp_biofetch_genbank_proxy.1p.gz
/usr/share/man/man1/bp_bioflat_index.1p.gz
/usr/share/man/man1/bp_biogetseq.1p.gz
/usr/share/man/man1/bp_blast2tree.1p.gz
/usr/share/man/man1/bp_bulk_load_gff.1p.gz
/usr/share/man/man1/bp_chaos_plot.1p.gz
/usr/share/man/man1/bp_classify_hits_kingdom.1p.gz
/usr/share/man/man1/bp_composite_LD.1p.gz
/usr/share/man/man1/bp_dbsplit.1p.gz
/usr/share/man/man1/bp_download_query_genbank.1p.gz
/usr/share/man/man1/bp_extract_feature_seq.1p.gz
/usr/share/man/man1/bp_fast_load_gff.1p.gz
/usr/share/man/man1/bp_fastam9_to_table.1p.gz
/usr/share/man/man1/bp_fetch.1p.gz
/usr/share/man/man1/bp_filter_search.1p.gz
/usr/share/man/man1/bp_find-blast-matches.1p.gz
/usr/share/man/man1/bp_flanks.1p.gz
/usr/share/man/man1/bp_gccalc.1p.gz
/usr/share/man/man1/bp_genbank2gff.1p.gz
/usr/share/man/man1/bp_genbank2gff3.1p.gz
/usr/share/man/man1/bp_generate_histogram.1p.gz
/usr/share/man/man1/bp_heterogeneity_test.1p.gz
/usr/share/man/man1/bp_hivq.1p.gz
/usr/share/man/man1/bp_hmmer_to_table.1p.gz
/usr/share/man/man1/bp_index.1p.gz
/usr/share/man/man1/bp_load_gff.1p.gz
/usr/share/man/man1/bp_local_taxonomydb_query.1p.gz
/usr/share/man/man1/bp_make_mrna_protein.1p.gz
/usr/share/man/man1/bp_mask_by_search.1p.gz
/usr/share/man/man1/bp_meta_gff.1p.gz
/usr/share/man/man1/bp_mrtrans.1p.gz
/usr/share/man/man1/bp_mutate.1p.gz
/usr/share/man/man1/bp_netinstall.1p.gz
/usr/share/man/man1/bp_nexus2nh.1p.gz
/usr/share/man/man1/bp_nrdb.1p.gz
/usr/share/man/man1/bp_oligo_count.1p.gz
/usr/share/man/man1/bp_parse_hmmsearch.1p.gz
/usr/share/man/man1/bp_process_gadfly.1p.gz
/usr/share/man/man1/bp_process_sgd.1p.gz
/usr/share/man/man1/bp_process_wormbase.1p.gz
/usr/share/man/man1/bp_query_entrez_taxa.1p.gz
/usr/share/man/man1/bp_remote_blast.1p.gz
/usr/share/man/man1/bp_revtrans-motif.1p.gz
/usr/share/man/man1/bp_search2alnblocks.1p.gz
/usr/share/man/man1/bp_search2gff.1p.gz
/usr/share/man/man1/bp_search2table.1p.gz
/usr/share/man/man1/bp_search2tribe.1p.gz
/usr/share/man/man1/bp_seq_length.1p.gz
/usr/share/man/man1/bp_seqconvert.1p.gz
/usr/share/man/man1/bp_seqcut.1p.gz
/usr/share/man/man1/bp_seqfeature_load.1p.gz
/usr/share/man/man1/bp_seqpart.1p.gz
/usr/share/man/man1/bp_seqret.1p.gz
/usr/share/man/man1/bp_seqretsplit.1p.gz
/usr/share/man/man1/bp_split_seq.1p.gz
/usr/share/man/man1/bp_sreformat.1p.gz
/usr/share/man/man1/bp_taxid4species.1p.gz
/usr/share/man/man1/bp_taxonomy2tree.1p.gz
/usr/share/man/man1/bp_translate_seq.1p.gz
/usr/share/man/man1/bp_tree2pag.1p.gz
/usr/share/man/man1/bp_unflatten_seq.1p.gz