[ Quellcode: r-bioc-edaseq ]
Paket: r-bioc-edaseq (2.24.0+dfsg-1)
Links für r-bioc-edaseq
Debian-Ressourcen:
Quellcode-Paket r-bioc-edaseq herunterladen:
- [r-bioc-edaseq_2.24.0+dfsg-1.dsc]
- [r-bioc-edaseq_2.24.0+dfsg.orig.tar.xz]
- [r-bioc-edaseq_2.24.0+dfsg-1.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [bioconductor.org]
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GNU R exploratory data analysis and normalization for RNA-Seq
Numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).
Andere Pakete mit Bezug zu r-bioc-edaseq
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- dep: r-api-4.0
- virtuelles Paket, bereitgestellt durch r-base-core
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- dep: r-api-bioc-3.12
- virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
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- dep: r-base-core (>= 4.0.3-1)
- GNU R - System für statistische Berechnungen und Grafik - Kern
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- dep: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-aroma.light
- BioConductor methods normalization and visualization of microarray data
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- dep: r-bioc-biobase (>= 2.15.1)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
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- dep: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-biostrings
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 1.13.9)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools (>= 1.5.75)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-shortread (>= 1.11.42)
- GNU R classes and methods for high-throughput short-read sequencing data
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- dep: r-cran-biocmanager
- access the Bioconductor project package repository
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- rec: r-cran-testthat
- GNU R testsuite
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-edger
- Empirische Analyse von digitalen Genexpressionsdaten mit R
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- sug: r-cran-kernsmooth
- GNU-R-Paket für Kernel-Regression und Dichteschätzung
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
r-bioc-edaseq herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 365,1 kB | 519,0 kB | [Liste der Dateien] |