Alle Optionen
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Quellcode: indelible  ]

Paket: indelible (1.03-5)

Links für indelible

Screenshot

Debian-Ressourcen:

Quellcode-Paket indelible herunterladen:

Betreuer:

Externe Ressourcen:

Ähnliche Pakete:

powerful and flexible simulator of biological evolution

INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.

Nucleotide simulations may use the general unrestricted model or the general time reversible model and its derivatives, and amino-acid simulations can be conducted using fifteen different empirical rate matrices. Substitution rate heterogeneity can be modeled via the continuous and discrete gamma distributions, with or without a proportion of invariant sites. INDELible can also simulate under non-homogeneous and non-stationary conditions where evolutionary models are permitted to change across a phylogeny.

Unique among indel simulation programs, INDELible offers the ability to simulate using codon models that exhibit nonsynonymous/synonymous rate ratio heterogeneity among sites and/or lineages.

Andere Pakete mit Bezug zu indelible

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • erweitert

indelible herunterladen

Download für alle verfügbaren Architekturen
Architektur Paketgröße Größe (installiert) Dateien
amd64 409,5 kB1.463,0 kB [Liste der Dateien]
arm64 371,6 kB1.291,0 kB [Liste der Dateien]
armel 395,9 kB1.398,0 kB [Liste der Dateien]
armhf 402,3 kB1.194,0 kB [Liste der Dateien]
i386 411,5 kB1.514,0 kB [Liste der Dateien]
mips64el 375,9 kB1.444,0 kB [Liste der Dateien]
mipsel 390,3 kB1.497,0 kB [Liste der Dateien]
ppc64el 398,7 kB1.439,0 kB [Liste der Dateien]
s390x 363,4 kB1.387,0 kB [Liste der Dateien]