Paket: python3-dna-jellyfish (2.3.0-10)
Links für python3-dna-jellyfish
Debian-Ressourcen:
Quellcode-Paket jellyfish herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Shaun Jackman (QS-Seite)
- Andreas Tille (QS-Seite)
- Michael R. Crusoe (QS-Seite)
Externe Ressourcen:
- Homepage [www.cbcb.umd.edu]
Ähnliche Pakete:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Andere Pakete mit Bezug zu python3-dna-jellyfish
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- dep: libc6 (>= 2.4)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC Support-Bibliothek
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: python3
- Interaktive objektorientierte Hochsprache (Python3-Standardversion)
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
python3-dna-jellyfish herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| armel | 52,8 kB | 166,0 kB | [Liste der Dateien] |