Paket: libseqlib2 (1.2.0+dfsg-4)

Links für libseqlib2

Debian-Ressourcen:

Quellcode-Paket libseqlib herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [github.com]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Andere Pakete mit Bezug zu libseqlib2

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: libc6 (>= 2.17)

GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libfml0 (>= 0.1+git20190320.b499514)

library for assembling Illumina short reads in small regions
dep: libgcc-s1 (>= 3.0)

GCC Support-Bibliothek
dep: libhts3 (>= 1.10)

C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate
dep: libjsoncpp24 (>= 1.9.4)

C++-Bibliothek zum Lesen und Schreiben von JavaScript Object Notation
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 9)

GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
dep: zlib1g (>= 1:1.1.4)

Kompressions-Bibliothek - Laufzeit

libseqlib2 herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
arm64	144,6 kB	528,0 kB	[Liste der Dateien]