Paket: qiime (2022.11.1-2)
Links für qiime
Debian-Ressourcen:
Quellcode-Paket qiime herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Steffen Moeller (QS-Seite)
- Liubov Chuprikova (QS-Seite)
- Andreas Tille (QS-Seite)
- Étienne Mollier (QS-Seite)
Externe Ressourcen:
- Homepage [qiime2.org]
Ähnliche Pakete:
Quantitative Insights Into Microbial Ecology
Microbes are surrounding us, animals, plants and all their parasites with strong effect on these and the environment these live in. Soil quality comes to mind but also the effect that bacteria have on each other. Humans are influencing the absolute and relative abundance of bacteria by antibiotics, food, fertilizers - you name it - and these changes affect us.
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:
* Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line,graphical)
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.
Andere Pakete mit Bezug zu qiime
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-bibtexparser
- Python 3 library to parse bibtex files
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- dep: python3-dateutil
- Leistungsfähige Erweiterungen für das Python-3-Standardmodul datetime
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- dep: python3-decorator
- Vereinfacht Programmierern die Anwendung von Python-»Decorators«
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- dep: python3-dill
- Serialisiert Python 3 (fast) vollständig
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- dep: python3-flufl.lock
- NFS-safe file-based lock with timeouts (Python 3)
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- dep: python3-networkx
- Werkzeug zum Erstellen, Manipulieren und Studieren komplexer Netzwerke (Python 3)
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-psutil
- Modul mit komfortablen Funktionen für die Prozessverwaltung (Python 3)
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- dep: python3-pyparsing
- Alternative zur Erzeugung und Ausführung einfacher Grammatiken - Python 3.x
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- dep: python3-tzlocal
- tzinfo object for the local timezone
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- dep: python3-yaml
- Python3-Parser und -Emitter für YAML
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- rec: q2-cutadapt
- QIIME 2 plugin to work with adapters in sequence data
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- rec: q2-demux
- QIIME 2 plugin for demultiplexing of sequence reads
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- rec: q2-feature-classifier
- QIIME 2 plugin supporting taxonomic classification
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- rec: q2-feature-table
- QIIME 2 plugin supporting operations on feature tables
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- rec: q2-metadata
- QIIME 2 plugin for working with and visualizing Metadata
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- rec: q2-quality-filter
- QIIME2 plugin for PHRED-based filtering and trimming
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- rec: q2-types
- QIIME 2 plugin defining types for microbiome analysis
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- rec: q2cli
- Click-based command line interface for QIIME 2
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- rec: q2templates
- Design template package for QIIME 2 Plugins
qiime herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 178,3 kB | 1.311,0 kB | [Liste der Dateien] |