Paket: miniasm (0.3+dfsg-4)

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Markierungen: Biologie: Nukleinsäuren, Feld: Biologie, field::biology:bioinformatics, implemented-in::c, Benutzer-Schnittstellen: Kommandozeile, Rolle: role::program, science::calculation, Zweck: Berechnen, use::comparing, works-with::biological-sequence

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