Paket: r-bioc-nanostringqcpro (1.30.0-1)

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processing and QA for NanoString mRNA expression data

NanoStringQCPro provides a set of quality metrics that can be used to assess the quality of NanoString mRNA gene expression data -- i.e. to identify outlier probes and outlier samples. It also provides different background subtraction and normalization approaches for this data. It outputs suggestions for flagging samples/probes and an easily sharable html quality control output.

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dep: r-api-4.0

virtuelles Paket, bereitgestellt durch r-base-core
dep: r-api-bioc-3.16

virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R - System für statistische Berechnungen und Grafik - Kern
dep: r-bioc-annotationdbi (>= 1.26.0)

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-biobase (>= 2.24.0)

base functions for Bioconductor
dep: r-bioc-org.hs.eg.db (>= 2.14.0)

genome-wide annotation for Human
dep: r-cran-knitr (>= 1.12)

GNU R package for dynamic report generation using Literate Programming
dep: r-cran-nmf (>= 0.20.5)

GNU R framework to perform non-negative matrix factorization
dep: r-cran-png (>= 0.1-7)

GNU R package to read and write PNG images
dep: r-cran-rcolorbrewer (>= 1.0-5)

GNU R package providing suitable color palettes

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-cran-rmarkdown

Konvertierung von R-Markdown-Dokumenten in verschiedene Formate
sug: r-cran-roxygen2 (>= 4.0.1)

in-line documentation for GNU R
sug: r-cran-testthat

GNU R testsuite

r-bioc-nanostringqcpro herunterladen

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