Paket: q2-types (2022.11.1-2)

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Homepage [qiime2.org]

QIIME 2 plugin defining types for microbiome analysis

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

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dep: libopenblas0

Optimized BLAS (linear algebra) library (meta)
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biom-format

Biological Observation Matrix (BIOM) format (Python 3)
dep: python3-h5py

general-purpose Python interface to hdf5
dep: python3-ijson

event-driven JSON parser (Python 3 version)
dep: python3-numpy

Schnelle Array-Einrichtung für die Sprache Python 3
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-setuptools

Erweiterungen für die Python3 Distutils
dep: python3-skbio

Python3 data structures, algorithms, educational resources for bioinformatic
dep: qiime (>= 2022.11.1)

Quantitative Insights Into Microbial Ecology

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