Package: giira (0.0.20140625-2)

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RNA-Seq driven gene finding incorporating ambiguous reads

GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.

Other Packages Related to giira

depends

recommends

suggests

enhances

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: glpk-utils

linear programming kit - utility files
dep: libglpk-java

Java binding to the GNU Linear Programming Kit
dep: tophat

fast splice junction mapper for RNA-Seq reads

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Architecture	Package Size	Installed Size	Files
amd64	140.1 kB	172.0 kB	[list of files]