Package: belvu (4.44.1+dfsg-3)

Links for belvu

Debian Resources:

Download Source Package seqtools:

Maintainers:

External Resources:

Homepage [www.sanger.ac.uk]

Similar packages:

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Tags: Interface Toolkit: GTK

Other Packages Related to belvu

depends

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dep: libatk1.0-0 (>= 1.12.4)

ATK accessibility toolkit
dep: libc6 (>= 2.14)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libcairo2 (>= 1.2.4)

Cairo 2D vector graphics library
dep: libcurl4 (>= 7.16.2)

easy-to-use client-side URL transfer library (OpenSSL flavour)
dep: libfontconfig1 (>= 2.12.6)

generic font configuration library - runtime
dep: libfreetype6 (>= 2.2.1)

FreeType 2 font engine, shared library files
dep: libgbtools0

library for visualising sequence alignments
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libgdk-pixbuf2.0-0 (>= 2.22.0)

GDK Pixbuf library
dep: libglib2.0-0 (>= 2.22.0)

GLib library of C routines
dep: libgtk2.0-0 (>= 2.12.0)

GTK+ graphical user interface library
dep: libjsoncpp1 (>= 1.7.4)

library for reading and writing JSON for C++
dep: libpango-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libpangocairo-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libpangoft2-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libstdc++6 (>= 4.1.1)

GNU Standard C++ Library v3

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Architecture	Package Size	Installed Size	Files
amd64	197.1 kB	396.0 kB	[list of files]