all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: gmap  ]

Package: gmap (2021-02-22+ds-1)

Links for gmap

Screenshot

Debian Resources:

Download Source Package gmap:

Maintainers:

External Resources:

Similar packages:

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

Other Packages Related to gmap

  • depends
  • recommends
  • suggests
  • enhances

Download gmap

Download for all available architectures
Architecture Package Size Installed Size Files
ppc64el 7,219.0 kB60,727.0 kB [list of files]