[ Source: last-align ]
Package: last-align (1179-1 and others)
Links for last-align
Debian Resources:
Download Source Package last-align:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Charles Plessy (QA Page)
- Andreas Tille (QA Page)
- Nilesh Patra (QA Page)
External Resources:
- Homepage [last.cbrc.jp]
Similar packages:
genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:
* Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome.
The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.
Other Packages Related to last-align
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
-
- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: parallel
- build and execute command lines from standard input in parallel
-
- rec: python3
- interactive high-level object-oriented language (default python3 version)
-
- rec: python3-pil
- Python Imaging Library (Python3)
Download last-align
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 1179-1+b1 | 1,826.5 kB | 21,262.0 kB | [list of files] |
| arm64 | 1179-1+b1 | 751.8 kB | 3,742.0 kB | [list of files] |
| armel | 1179-1+b1 | 682.4 kB | 3,778.0 kB | [list of files] |
| armhf | 1179-1+b1 | 679.5 kB | 2,910.0 kB | [list of files] |
| i386 | 1179-1+b1 | 3,016.0 kB | 29,262.0 kB | [list of files] |
| mips64el | 1179-1+b1 | 798.0 kB | 4,606.0 kB | [list of files] |
| mipsel | 1179-1+b1 | 732.3 kB | 4,556.0 kB | [list of files] |
| ppc64el | 1179-1+b1 | 843.7 kB | 4,850.0 kB | [list of files] |
| s390x | 1179-1+b1 | 775.4 kB | 4,234.0 kB | [list of files] |